6GME

Structure of H. sapiens SPT6 tandem SH2 domain

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	SH2_2_C	e6gmeA2	A: a+b two layers	X: SH2 (From Topology)	H: SH2 (From Topology)	T: SH2	F: SH2_2_C	ECOD (1.6)
A	SH2_2_N	e6gmeA1	A: a+b two layers	X: SH2 (From Topology)	H: SH2 (From Topology)	T: SH2	F: SH2_2_N	ECOD (1.6)
B	SH2_2_C	e6gmeB2	A: a+b two layers	X: SH2 (From Topology)	H: SH2 (From Topology)	T: SH2	F: SH2_2_C	ECOD (1.6)
B	SH2_2_N	e6gmeB1	A: a+b two layers	X: SH2 (From Topology)	H: SH2 (From Topology)	T: SH2	F: SH2_2_N	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF14633	SH2 domain (SH2_2)	SH2 domain	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	SPT6 tandem SH2 domain,Transcription elongation factor SPT6	protein binding binding histone binding RNA binding organic cyclic compound binding nucleic acid binding DNA binding protein-containing complex binding chromatin binding nucleosome binding	developmental process multicellular organismal process chordate embryonic development embryo development in utero embryonic development multicellular organism development anatomical structure morphogenesis blastocyst formation embryo development ending in birth or egg hatching anatomical structure development anatomical structure formation involved in morphogenesis blastocyst development RNA transport nitrogen compound transport developmental process multicellular organismal process chordate embryonic development embryo development in utero embryonic development multicellular organism development anatomical structure morphogenesis blastocyst formation embryo development ending in birth or egg hatching anatomical structure development anatomical structure formation involved in morphogenesis blastocyst development RNA transport nitrogen compound transport transport nucleic acid transport mRNA transport establishment of localization localization establishment of RNA localization macromolecule localization RNA localization nucleobase-containing compound transport regulation of localization cellular localization regulation of cellular process nucleocytoplasmic transport regulation of mRNA export from nucleus cellular biosynthetic process nuclear transport mRNA export from nucleus establishment of localization in cell nuclear export ribonucleoprotein complex localization regulation of intracellular transport regulation of ribonucleoprotein complex localization regulation of biological process regulation of transport cellular metabolic process regulation of RNA export from nucleus regulation of nucleobase-containing compound transport biological regulation intracellular transport regulation of nucleocytoplasmic transport gene expression macromolecule biosynthetic process RNA export from nucleus biosynthetic process regulation of cellular localization cellular process metabolic process macromolecule metabolic process RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process mRNA processing mRNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process RNA processing regulation of developmental process cellular developmental process regulation of cell differentiation muscle cell differentiation muscle structure development regulation of muscle cell differentiation cell differentiation adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains lymphocyte mediated immunity regulation of immune effector process regulation of DNA recombination response to stimulus regulation of leukocyte activation regulation of cell activation B cell activation involved in immune response cell activation involved in immune response regulation of primary metabolic process leukocyte mediated immunity regulation of immune system process somatic diversification of immune receptors regulation of nucleobase-containing compound metabolic process somatic recombination of immunoglobulin genes involved in immune response system development immune response regulation of adaptive immune response DNA recombination regulation of cellular metabolic process DNA metabolic process regulation of B cell mediated immunity immune effector process somatic diversification of immunoglobulins regulation of gene expression regulation of leukocyte mediated immunity regulation of response to stimulus B cell mediated immunity regulation of immune response regulation of macromolecule biosynthetic process regulation of production of molecular mediator of immune response regulation of metabolic process regulation of DNA metabolic process isotype switching immune system development immunoglobulin production immunoglobulin production involved in immunoglobulin-mediated immune response somatic cell DNA recombination lymphocyte activation leukocyte activation somatic diversification of immunoglobulins involved in immune response somatic recombination of immunoglobulin gene segments regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains regulation of immunoglobulin mediated immune response leukocyte activation involved in immune response regulation of B cell activation regulation of multicellular organismal process lymphocyte activation involved in immune response regulation of biosynthetic process production of molecular mediator of immune response regulation of isotype switching B cell activation cell activation regulation of macromolecule metabolic process adaptive immune response immunoglobulin mediated immune response regulation of cellular biosynthetic process regulation of lymphocyte mediated immunity regulation of immunoglobulin production immune system process somatic diversification of immune receptors via germline recombination within a single locus regulation of lymphocyte activation RNA splicing transcription elongation by RNA polymerase II protein-DNA complex organization cellular component organization DNA-templated transcription transcription by RNA polymerase II chromatin organization chromatin remodeling cellular component organization or biogenesis transcription elongation-coupled chromatin remodeling protein-containing complex organization DNA-templated transcription elongation regulation of RNA metabolic process regulation of mRNA processing regulation of mRNA metabolic process nucleosome organization positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of macromolecule metabolic process regulation of transcription by RNA polymerase II regulation of DNA-templated transcription elongation positive regulation of nucleobase-containing compound metabolic process regulation of transcription elongation by RNA polymerase II positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process regulation of DNA-templated transcription positive regulation of DNA-templated transcription positive regulation of transcription elongation by RNA polymerase II positive regulation of biological process positive regulation of cellular metabolic process positive regulation of biosynthetic process positive regulation of DNA-templated transcription, elongation positive regulation of cellular process regulation of RNA biosynthetic process positive regulation of RNA biosynthetic process positive regulation of cellular biosynthetic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure transcription elongation factor complex nucleus membrane-enclosed lumen nuclear protein-containing complex intracellular membrane-bounded organelle cellular anatomical entity intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle membrane-bounded organelle protein-containing complex intracellular anatomical structure transcription elongation factor complex nucleus membrane-enclosed lumen nuclear protein-containing complex intracellular membrane-bounded organelle cellular anatomical entity intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR042066	Spt6, Death-like domain	Homologous Superfamily
A, B	IPR028231	Transcription elongation factor Spt6, YqgF domain	Domain
A, B	IPR037027	YqgF/RNase H-like domain superfamily	Homologous Superfamily
A, B	IPR036860	SH2 domain superfamily	Homologous Superfamily
A, B	IPR000980	SH2 domain	Domain
A, B	IPR006641	YqgF/RNase H-like domain	Domain
A, B	IPR041692	HHH domain 9	Domain
A, B	IPR010994	RuvA domain 2-like	Homologous Superfamily
A, B	IPR023319	Tex-like protein, HTH domain superfamily	Homologous Superfamily
A, B	IPR012337	Ribonuclease H-like superfamily	Homologous Superfamily
A, B	IPR017072	Transcription elongation factor Spt6	Family
A, B	IPR035420	Spt6, SH2 domain	Domain
A, B	IPR032706	Transcription elongation factor Spt6, helix-hairpin-helix motif	Domain
A, B	IPR003029	S1 domain	Domain
A, B	IPR023323	Tex-like domain superfamily	Homologous Superfamily
A, B	IPR028088	Helix-turn-helix DNA-binding domain of Spt6	Domain
A, B	IPR035019	Spt6, SH2 domain, N terminus	Domain
A, B	IPR035018	Spt6, SH2 domain, C terminus	Domain
A, B	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
A, B	IPR028083	Spt6 acidic, N-terminal domain	Domain