6FEC

Human cap-dependent 48S pre-initiation complex


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
L [auth G]SCOP2B SuperfamilyNucleic acid-binding proteins 8052717 3000135 SCOP2B (2022-06-29)
L [auth G]SCOP2B SuperfamilyRibosomal S17 N-terminal domain-like 8052715 3002138 SCOP2B (2022-06-29)
M [auth H]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8082685 3000100 SCOP2B (2022-06-29)
N [auth I]SCOP2B SuperfamilyAlpha-L RNA-binding motif 8052755 3001473 SCOP2B (2022-06-29)
N [auth I]SCOP2B SuperfamilyNucleic acid-binding proteins 8052756 3000135 SCOP2B (2022-06-29)
N [auth I]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8052757 3000334 SCOP2B (2022-06-29)
O [auth J]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8052572 3000068 SCOP2B (2022-06-29)
Q [auth L]SCOP2B SuperfamilyS13-like H2TH domain 8101555 3000053 SCOP2B (2022-06-29)
W [auth U]SCOP2B SuperfamilyRibosomal protein S7 8066003 3000799 SCOP2B (2022-06-29)
X [auth V]SCOP2B SuperfamilyRibosomal protein S30e-like 8053453 3002190 SCOP2B (2022-06-29)
Y [auth W]SCOP2B SuperfamilyWinged helix DNA-binding domain 8090992 3000034 SCOP2B (2022-06-29)
BA [auth Z]SCOP2B SuperfamilyS15/NS1 RNA-binding domain 8052959 3001284 SCOP2B (2022-06-29)
BA [auth Z]SCOP2B SuperfamilyHomeodomain-like 8052958 3000001 SCOP2B (2022-06-29)
CA [auth a]SCOP2B SuperfamilyRibosomal protein S8 8095469 3000709 SCOP2B (2022-06-29)
C [auth 3]SCOP2B SuperfamilyTPR-like 8091483 3001345 SCOP2B (2022-06-29)
C [auth 3]SCOP2B SuperfamilyWinged helix DNA-binding domain 8091486 3000034 SCOP2B (2022-06-29)
HA [auth f]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like 8052791 3001397 SCOP2B (2022-06-29)
IA [auth g]SCOP2B SuperfamilyProkaryotic type KH domain (KH-domain type II) 8043545 3001043 SCOP2B (2022-06-29)
JA [auth h]SCOP2B SuperfamilyRibosomal protein S10 8098806 3001336 SCOP2B (2022-06-29)
KA [auth i]SCOP2B SuperfamilyRibosomal S3Ae-like 8053212 3002166 SCOP2B (2022-06-29)
LA [auth j]SCOP2B SuperfamilyTranslational machinery components 8098844 3000571 SCOP2B (2022-06-29)
NA [auth l]SCOP2B SuperfamilyNucleic acid-binding proteins 8063426 3000135 SCOP2B (2022-06-29)
QA [auth o]SCOP2B Superfamily50S Ribosomal protein L14-like 8053077 3000433 SCOP2B (2022-06-29)
SA [auth q]SCOP2B SuperfamilyGS N-terminal domain-like 8053171 3000408 SCOP2B (2022-06-29)
TA [auth r]SCOP2B SuperfamilyL30e-like 8063978 3001739 SCOP2B (2022-06-29)
VA [auth t]SCOP2B SuperfamilyWinged helix DNA-binding domain 8055714 3000034 SCOP2B (2022-06-29)
WA [auth u]SCOP2B SuperfamilyRNA-binding domain, RBD 8043568 3000110 SCOP2B (2022-06-29)
F [auth 6]SCOP2B SuperfamilyWinged helix DNA-binding domain 8002864 3000034 SCOP2B (2022-06-29)
F [auth 6]SCOP2B SuperfamilyARM repeat-like 8002866 3000116 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
L [auth G]Ribosomal_S17_1e6fecG1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S17_1ECOD (1.6)
M [auth H]Ribosomal_S9e6fecH1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S9ECOD (1.6)
N [auth I]Ribosomal_S4ee6fecI2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S4eECOD (1.6)
N [auth I]40S_S4_Ce6fecI1 A: beta barrelsX: SH3H: SH3T: SH3F: 40S_S4_CECOD (1.6)
N [auth I]RS4NTe6fecI3 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: RS4NTECOD (1.6)
O [auth J]Ribosomal_S14_2e6fecJ1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S14_2ECOD (1.6)
P [auth K]S4e6fecK1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: S4ECOD (1.6)
Q [auth L]Ribosomal_S13e6fecL1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: Ribosomal_S13ECOD (1.6)
S [auth P]S1_1e6fecP2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: S1_1ECOD (1.6)
S [auth P]EIF_2_alpha_Ne6fecP1 A: alpha arraysX: HhH/H2THH: eIF2alpha middle domain (From Topology)T: eIF2alpha middle domainF: EIF_2_alpha_NECOD (1.6)
S [auth P]EIF_2_alpha_Ce6fecP3 A: a+b two layersX: Alpha-beta plaitsH: eIF-2-alpha, C-terminal domain (From Topology)T: eIF-2-alpha, C-terminal domainF: EIF_2_alpha_CECOD (1.6)
T [auth Q]Ribosom_S12_S23e6fecQ1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosom_S12_S23ECOD (1.6)
U [auth R]Ribosomal_S19ee6fecR1 A: alpha arraysX: HTHH: HTHT: wingedF: Ribosomal_S19eECOD (1.6)
V [auth S]GTP_EFTU_D2_2e6fecS3 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: GTP_EFTU_D2_2ECOD (1.6)
V [auth S]eIF2_Ce6fecS1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Aminomethyltransferase beta-barrel domainF: eIF2_CECOD (1.6)
V [auth S]MnmE_helical_2nde6fecS4 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: MnmE_helical_2ndECOD (1.6)
V [auth S]KOG0466e6fecS2 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: KOG0466ECOD (1.6)
W [auth U]Ribosomal_S7_1e6fecU1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: Ribosomal_S7_1ECOD (1.6)
X [auth V]Ribosomal_S30e6fecV1 A: extended segmentsX: 40S ribosomal protein S30 (S30e) (From Topology)H: 40S ribosomal protein S30 (S30e) (From Topology)T: 40S ribosomal protein S30 (S30e)F: Ribosomal_S30ECOD (1.6)
Y [auth W]Ribosomal_S25e6fecW1 A: alpha arraysX: HTHH: HTHT: wingedF: Ribosomal_S25ECOD (1.6)
Z [auth X]Ribosomal_S7e_Ne6fecX2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: Ribosomal_S7e_NECOD (1.6)
Z [auth X]Ribosomal_S7e_C_1e6fecX1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: Ribosomal_S7e_C_1ECOD (1.6)
AA [auth Y]Ribosomal_S27ee6fecY1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_S27eECOD (1.6)
BA [auth Z]Ribosomal_S13_Ne6fecZ1 A: alpha arraysX: HTHH: 40S ribosomal protein S13 N-terminal domain (From Topology)T: 40S ribosomal protein S13 N-terminal domainF: Ribosomal_S13_NECOD (1.6)
BA [auth Z]Ribosomal_S15_2e6fecZ2 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: Ribosomal_S15_2ECOD (1.6)
CA [auth a]Ribosomal_S8_N_1e6feca1 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: Ribosomal_S8_N_1ECOD (1.6)
CA [auth a]Ribosomal_S8_C_1e6feca2 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: Ribosomal_S8_C_1ECOD (1.6)
C [auth 3]PCIe6fec32 A: alpha arraysX: HTHH: HTHT: wingedF: PCIECOD (1.6)
C [auth 3]eIF3_Ne6fec31 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: eIF3_NECOD (1.6)
C [auth 3]KOG2758e6fec33 A: extended segmentsX: 26S proteasome regulatory subunits C-terminal helicesH: 26S proteasome regulatory subunit RPN7 C-terminal helix (From Topology)T: 26S proteasome regulatory subunit RPN7 C-terminal helixF: KOG2758ECOD (1.6)
DA [auth b]Ribosomal_S21ee6fecb1 A: a+b two layersX: 40S ribosomal protein rpS21 (S21e) (From Topology)H: 40S ribosomal protein rpS21 (S21e) (From Topology)T: 40S ribosomal protein rpS21 (S21e)F: Ribosomal_S21eECOD (1.6)
EA [auth c]Ribosomal_S5_C_1e6fecc3 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S5_C_1ECOD (1.6)
EA [auth c]Ribosomal_S5_3e6fecc2 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: Ribosomal_S5_3ECOD (1.6)
EA [auth c]Ribosomal_S5_2e6fecc1 A: extended segmentsX: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)T: N-terminal region in 40S ribosomal protein rpS2 (S5p)F: Ribosomal_S5_2ECOD (1.6)
GA [auth e]Ribosomal_S17ee6fece1 A: alpha arraysX: HTHH: HTHT: FF domainF: Ribosomal_S17eECOD (1.6)
HA [auth f]Ribosomal_S2_2e6fecf1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: Ribosomal_S2_2ECOD (1.6)
IA [auth g]Ribosomal_S3_Ce6fecg2 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: Ribosomal_S3_CECOD (1.6)
IA [auth g]KH_2_3e6fecg1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: KH_2_3ECOD (1.6)
JA [auth h]Ribosomal_S10_1e6fech1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: Ribosomal_S10_1ECOD (1.6)
KA [auth i]Ribosomal_S3Ae_Ne6feci1 A: beta barrelsX: Ribosomal protein L25-likeH: 40S ribosomal protein S3A N-terminal domain (From Topology)T: 40S ribosomal protein S3A N-terminal domainF: Ribosomal_S3Ae_NECOD (1.6)
KA [auth i]Ribosomal_S3Ae_Ce6feci2 A: a+b two layersX: T-foldH: 40S ribosomal protein S3A C-terminal domain (From Topology)T: 40S ribosomal protein S3A C-terminal domainF: Ribosomal_S3Ae_CECOD (1.6)
LA [auth j]Ribosomal_S11e6fecj1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_S11ECOD (1.6)
MA [auth k]Ribosomal_S26ee6feck1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S26eECOD (1.6)
D [auth 4]JAB_1e6fec42 A: a+b three layersX: Cytidine deaminase-like (From Topology)H: Cytidine deaminase-like (From Topology)T: Cytidine deaminase-likeF: JAB_1ECOD (1.6)
D [auth 4]MitMem_rege6fec41 A: extended segmentsX: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology)H: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology)T: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domainF: MitMem_regECOD (1.6)
NA [auth l]Ribosomal_S28ee6fecl1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S28eECOD (1.6)
OA [auth m]DUF1899e6fecm1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: DUF1899ECOD (1.6)
PA [auth n]Ribosomal_S19e6fecn1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: Ribosomal_S19ECOD (1.6)
QA [auth o]Ribosomal_S8ee6feco1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_S8eECOD (1.6)
RA [auth p]Ribosomal_S27e6fecp1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_S27ECOD (1.6)
SA [auth q]Ribosomal_S6ee6fecq1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: Ribosomal_S6eECOD (1.6)
TA [auth r]Ribosomal_L7Aee6fecr1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7AeECOD (1.6)
UA [auth s]Ribosomal_S24ee6fecs1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_S24eECOD (1.6)
VA [auth t]S10_plectine6fect1 A: alpha arraysX: HTHH: HTHT: wingedF: S10_plectinECOD (1.6)
WA [auth u]RRM_1_4e6fecu1 A: a+b two layersX: Alpha-beta plaitsH: RNA-binding domain, RBD (From Topology)T: RNA-binding domain, RBDF: RRM_1_4ECOD (1.6)
E [auth 5]JAB_1e6fec51 A: a+b three layersX: Cytidine deaminase-like (From Topology)H: Cytidine deaminase-like (From Topology)T: Cytidine deaminase-likeF: JAB_1ECOD (1.6)
E [auth 5]KOG1560e6fec52 A: extended segmentsX: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology)H: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology)T: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domainF: KOG1560ECOD (1.6)
F [auth 6]CSN8_PSD8_EIF3K_Ce6fec62 A: alpha arraysX: HTHH: HTHT: wingedF: CSN8_PSD8_EIF3K_CECOD (1.6)
F [auth 6]SAC3_GANP_1ste6fec61 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: SAC3_GANP_1stECOD (1.6)
I [auth 9]eIF-3_zetae6fec91 A: a/b three-layered sandwichesX: Restriction endonuclease-likeH: Restriction endonuclease-like (From Topology)T: Restriction endonuclease-likeF: eIF-3_zetaECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
J [auth A]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
K [auth F]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
L [auth G]PF07650KH domain (KH_2)KH domain- Domain
L [auth G]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
L [auth G]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
L [auth G]PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
M [auth H]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
M [auth H]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
N [auth I]PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
N [auth I]PF1612140S ribosomal protein S4 C-terminus (40S_S4_C)40S ribosomal protein S4 C-terminus- Family
N [auth I]PF08071RS4NT (NUC023) domain (RS4NT)RS4NT (NUC023) domainThis is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1].Domain
N [auth I]PF01015Ribosomal S3Ae family (Ribosomal_S3Ae)Ribosomal S3Ae family- Family
N [auth I]PF00467KOW motif (KOW)KOW motif- Family
O [auth J]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
O [auth J]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
P [auth K]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
P [auth K]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
Q [auth L]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
Q [auth L]PF01200Ribosomal protein S28e (Ribosomal_S28e)Ribosomal protein S28e- Family
R [auth N]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
S [auth P]PF01599Ribosomal protein S27a (Ribosomal_S27)Ribosomal protein S27aThis family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ...This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis [3]. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [2].
Domain
T [auth Q]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
T [auth Q]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
U [auth R]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
V [auth S]PF00009Elongation factor Tu GTP binding domain (GTP_EFTU)Elongation factor Tu GTP binding domainThis domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains.Domain
V [auth S]PF03144Elongation factor Tu domain 2 (GTP_EFTU_D2)Elongation factor Tu domain 2Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as e ...Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as elongation factor G and translation initiation factor IF-2. This domain is structurally related to Pfam:PF03143, and in fact has weak sequence matches to this domain.
Domain
V [auth S]PF09173Initiation factor eIF2 gamma, C terminal (eIF2_C)Initiation factor eIF2 gamma, C terminalMembers of this family, which are found in the initiation factors eIF2 and EF-Tu, adopt a structure consisting of a beta barrel with Greek key topology. They are required for formation of the ternary complex with GTP and initiator tRNA [1].Domain
W [auth U]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
X [auth V]PF04758Ribosomal protein S30 (Ribosomal_S30)Ribosomal protein S30- Family
Y [auth W]PF03297S25 ribosomal protein (Ribosomal_S25)S25 ribosomal protein- Family
Z [auth X]PF01251Ribosomal protein S7e (Ribosomal_S7e)Ribosomal protein S7e- Family
AA [auth Y]PF01667Ribosomal protein S27 (Ribosomal_S27e)Ribosomal protein S27- Family
BA [auth Z]PF08069Ribosomal S13/S15 N-terminal domain (Ribosomal_S13_N)Ribosomal S13/S15 N-terminal domainThis domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1].Domain
BA [auth Z]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
C [auth 3]PF09440eIF3 subunit 6 N terminal domain (eIF3_N)eIF3 subunit 6 N terminal domainThis is the N terminal domain of subunit 6 translation initiation factor eIF3.Domain
C [auth 3]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1].Domain
C [auth 3]PF21357Eukaryotic translation initiation factor 3 subunit E, C-terminal (EIF3E_C)Eukaryotic translation initiation factor 3 subunit E, C-terminalEukaryotic translation initiation factor 3 subunit E (EIF3E) is a component of the EIF3 complex, involved in protein synthesis. This is the C-terminal helical tail of EIF3E [1].Domain
F [auth 6]PF10075CSN8/PSMD8/EIF3K family (CSN8_PSD8_EIF3K)CSN8/PSMD8/EIF3K family- Family
H [auth 8]PF18005eIF3 subunit M, C-terminal helix (eIF3m_C_helix)eIF3 subunit M, C-terminal helixThis is the C-terminal helix domain found in Eukaryotic translation initiation factor 3 subunit M (eIF3m). In mammalian eIF3a, the C-terminal helix following the PCI domain is involved in interactions with other core subunits [1].Domain
H [auth 8]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1].Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 1]Eukaryotic translation initiation factor 3 subunit A---
J [auth A]18S ribosomal RNA---
K [auth F]Messenger RNA (26-MER)---
L [auth G]40S ribosomal protein S11
M [auth H]40S ribosomal protein S16
N [auth I]40S ribosomal protein S4, X isoform
O [auth J]40S ribosomal protein S29
P [auth K]40S ribosomal protein S9
Q [auth L]40S ribosomal protein S18
R [auth N]Transfer RNA (75-MER)---
S [auth P]Eukaryotic translation initiation factor 2 subunit 1---
B [auth 2]Eukaryotic translation initiation factor 3 subunit C---
T [auth Q]40S ribosomal protein S23
U [auth R]40S ribosomal protein S19---
V [auth S]Eukaryotic translation initiation factor 2 subunit 3
W [auth U]40S ribosomal protein S5
X [auth V]40S ribosomal protein S30
Y [auth W]40S ribosomal protein S25
Z [auth X]40S ribosomal protein S7
AA [auth Y]40S ribosomal protein S27
BA [auth Z]40S ribosomal protein S13
CA [auth a]40S ribosomal protein S15a
C [auth 3]Eukaryotic translation initiation factor 3 subunit E
DA [auth b]40S ribosomal protein S21---
EA [auth c]40S ribosomal protein S2---
FA [auth d]EUKARYOTIC TRANSLATION INITIATION FACTOR 2 BETA SUBUNIT (eIF2-Beta)---
GA [auth e]40S ribosomal protein S17
HA [auth f]40S ribosomal protein SA
IA [auth g]40S ribosomal protein S3
JA [auth h]40S ribosomal protein S20
KA [auth i]40S ribosomal protein S3a
LA [auth j]40S ribosomal protein S14
MA [auth k]40S ribosomal protein S26---
D [auth 4]Eukaryotic translation initiation factor 3 subunit F---
NA [auth l]40S ribosomal protein S28
OA [auth m]Receptor of activated protein C kinase 1
PA [auth n]40S ribosomal protein S15
QA [auth o]40S ribosomal protein S8
RA [auth p]Ubiquitin-40S ribosomal protein S27a
SA [auth q]40S ribosomal protein S6
TA [auth r]40S ribosomal protein S12
UA [auth s]40S ribosomal protein S24
VA [auth t]40S ribosomal protein S10
WA [auth u]Eukaryotic translation initiation factor 4B
E [auth 5]Eukaryotic translation initiation factor 3 subunit H---
XA [auth w]Eukaryotic translation initiation factor 3 subunit B---
F [auth 6]Eukaryotic translation initiation factor 3 subunit K
G [auth 7]Eukaryotic translation initiation factor 3 subunit L
H [auth 8]Eukaryotic translation initiation factor 3 subunit M
I [auth 9]EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT D---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
L [auth G]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
L [auth G]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
L [auth G]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
L [auth G]IPR000266Small ribosomal subunit protein uS17Family
L [auth G]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
M [auth H]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
M [auth H]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
M [auth H]IPR000754Small ribosomal subunit protein uS9Family
M [auth H]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
N [auth I]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
N [auth I]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
N [auth I]IPR013845Small ribosomal subunit protein eS4, central regionDomain
N [auth I]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
N [auth I]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
N [auth I]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
N [auth I]IPR002942RNA-binding S4 domainDomain
N [auth I]IPR000876Small ribosomal subunit protein eS4Family
N [auth I]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
N [auth I]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
N [auth I]IPR005824KOWDomain
O [auth J]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
O [auth J]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
O [auth J]IPR001209Small ribosomal subunit protein uS14Family
O [auth J]IPR039744Small ribosomal subunit protein uS14, eukaryotes/archaeaFamily
P [auth K]IPR002942RNA-binding S4 domainDomain
P [auth K]IPR022801Small ribosomal subunit protein uS4Family
P [auth K]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
P [auth K]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
P [auth K]IPR005710Small ribosomal subunit protein uS4, eukaryotic/archaealFamily
P [auth K]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
Q [auth L]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
Q [auth L]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
Q [auth L]IPR001892Small ribosomal subunit protein uS13Family
Q [auth L]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
T [auth Q]IPR006032Small ribosomal subunit protein uS12Family
T [auth Q]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
T [auth Q]IPR005680Small ribosomal subunit protein uS12, eukaryotic/archaealFamily
V [auth S]IPR000795Translational (tr)-type GTP-binding domainDomain
V [auth S]IPR009001Translation elongation factor EF1A/initiation factor IF2gamma, C-terminalHomologous Superfamily
V [auth S]IPR004161Translation elongation factor EFTu-like, domain 2Domain
V [auth S]IPR050543Eukaryotic Initiation Factor 2 Gamma SubunitFamily
V [auth S]IPR044128Initiation factor eIF2 gamma, GTP-binding domainDomain
V [auth S]IPR015256Initiation factor eIF2 gamma, C-terminalDomain
V [auth S]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
V [auth S]IPR044127Initiation factor eIF2 gamma, domain 2Domain
V [auth S]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
W [auth U]IPR023798Small ribosomal subunit protein uS7 domainDomain
W [auth U]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
W [auth U]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
W [auth U]IPR000235Small ribosomal subunit protein uS7Family
W [auth U]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
X [auth V]IPR019954Ubiquitin conserved siteConserved Site
X [auth V]IPR000626Ubiquitin-like domainDomain
X [auth V]IPR006846Small ribosomal subunit protein eS30Family
X [auth V]IPR039415Ubiquitin-like protein FUBIDomain
X [auth V]IPR019956Ubiquitin domainDomain
X [auth V]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
Y [auth W]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
Y [auth W]IPR004977Small ribosomal subunit protein eS25Family
Z [auth X]IPR000554Small ribosomal subunit protein eS7Family
Z [auth X]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
AA [auth Y]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
AA [auth Y]IPR000592Small ribosomal subunit protein eS27Family
AA [auth Y]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
BA [auth Z]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
BA [auth Z]IPR000589Small ribosomal subunit protein uS15Family
BA [auth Z]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotesFamily
BA [auth Z]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
CA [auth a]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
CA [auth a]IPR000630Small ribosomal subunit protein uS8Family
CA [auth a]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
C [auth 3]IPR016650Eukaryotic translation initiation factor 3 subunit EFamily
C [auth 3]IPR019010Eukaryotic translation initiation factor 3 subunit E, N-terminalDomain
C [auth 3]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
C [auth 3]IPR000717Proteasome component (PCI) domainDomain
GA [auth e]IPR001210Small ribosomal subunit protein eS17Family
GA [auth e]IPR036401Small ribosomal subunit protein eS17 superfamilyHomologous Superfamily
GA [auth e]IPR018273Small ribosomal subunit protein eS17, conserved siteConserved Site
HA [auth f]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
HA [auth f]IPR001865Small ribosomal subunit protein uS2Family
HA [auth f]IPR032281Small ribosomal subunit protein uS2, C-terminal domainDomain
HA [auth f]IPR027504Small ribosomal subunit protein uS2, vertebratesFamily
HA [auth f]IPR005707Small ribosomal subunit protein uS2, eukaryotic/archaealFamily
HA [auth f]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
HA [auth f]IPR027498Small ribosomal subunit protein uS2, eukaryoticFamily
IA [auth g]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
IA [auth g]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
IA [auth g]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
IA [auth g]IPR004044K Homology domain, type 2Domain
IA [auth g]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
IA [auth g]IPR005703Small ribosomal subunit protein uS3, eukaryotic/archaealFamily
IA [auth g]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
JA [auth h]IPR027486Small ribosomal subunit protein uS10 domainDomain
JA [auth h]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
JA [auth h]IPR005729Small ribosomal subunit protein uS10, eukaryotic/archaealFamily
JA [auth h]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
JA [auth h]IPR001848Small ribosomal subunit protein uS10Family
KA [auth i]IPR001593Small ribosomal subunit protein eS1Family
KA [auth i]IPR018281Small ribosomal subunit protein eS1, conserved siteConserved Site
KA [auth i]IPR027500Small ribosomal subunit protein eS1, eukaryotesFamily
LA [auth j]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
LA [auth j]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
LA [auth j]IPR001971Small ribosomal subunit protein uS11Family
NA [auth l]IPR028626Ribosomal protein eS28 conserved siteConserved Site
NA [auth l]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
NA [auth l]IPR000289Small ribosomal subunit protein eS28Family
OA [auth m]IPR019775WD40 repeat, conserved siteConserved Site
OA [auth m]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
OA [auth m]IPR045223Small ribosomal subunit protein RACK1-likeFamily
OA [auth m]IPR020472G-protein beta WD-40 repeatRepeat
OA [auth m]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
OA [auth m]IPR001680WD40 repeatRepeat
PA [auth n]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
PA [auth n]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
PA [auth n]IPR005713Small ribosomal subunit protein uS19, eukaryotic/archaealFamily
PA [auth n]IPR002222Small ribosomal subunit protein uS19Family
QA [auth o]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotesHomologous Superfamily
QA [auth o]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
QA [auth o]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
QA [auth o]IPR001047Small ribosomal subunit protein eS8Family
RA [auth p]IPR019954Ubiquitin conserved siteConserved Site
RA [auth p]IPR050158Ubiquitin and ubiquitin-likeFamily
RA [auth p]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
RA [auth p]IPR000626Ubiquitin-like domainDomain
RA [auth p]IPR038582Small ribosomal subunit protein eS31 eukaryotic-type superfamilyHomologous Superfamily
RA [auth p]IPR002906Small ribosomal subunit protein eS31Domain
RA [auth p]IPR019956Ubiquitin domainDomain
RA [auth p]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
SA [auth q]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
SA [auth q]IPR001377Small ribosomal subunit protein eS6Family
SA [auth q]IPR014401Small ribosomal subunit protein eS6-likeFamily
TA [auth r]IPR000530Small ribosomal subunit protein eS12Family
TA [auth r]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
TA [auth r]IPR047860Small ribosomal subunit protein eS12, conserved siteConserved Site
TA [auth r]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
UA [auth s]IPR053709Eukaryotic Ribosomal Protein eS24Homologous Superfamily
UA [auth s]IPR001976Small ribosomal subunit protein eS24Family
UA [auth s]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
UA [auth s]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
VA [auth t]IPR037447Small ribosomal subunit protein eS10Family
VA [auth t]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
VA [auth t]IPR005326Plectin/eS10, N-terminalDomain
WA [auth u]IPR033107Eukaryotic translation initiation factor 4B, RNA recognition motifDomain
WA [auth u]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
WA [auth u]IPR000504RNA recognition motif domainDomain
WA [auth u]IPR035979RNA-binding domain superfamilyHomologous Superfamily
F [auth 6]IPR016024Armadillo-type foldHomologous Superfamily
F [auth 6]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
F [auth 6]IPR033464CSN8/PSMD8/EIF3KDomain
F [auth 6]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
F [auth 6]IPR016020Translation initiation factor 3, subunit 12, N-terminal, eukaryoticHomologous Superfamily
F [auth 6]IPR000717Proteasome component (PCI) domainDomain
F [auth 6]IPR009374Eukaryotic translation initiation factor 3 subunit KFamily
G [auth 7]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
G [auth 7]IPR000717Proteasome component (PCI) domainDomain
G [auth 7]IPR019382Translation initiation factor 3 complex subunit LFamily
H [auth 8]IPR016024Armadillo-type foldHomologous Superfamily
H [auth 8]IPR040750eIF3 subunit M, C-terminal helix domainDomain
H [auth 8]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
H [auth 8]IPR027528Eukaryotic translation initiation factor 3 subunit MFamily
H [auth 8]IPR045237Eukaryotic translation initiation factor 3 subunit M eIF3m/COP9 signalosome complex subunit 7 COPS7Family
H [auth 8]IPR000717Proteasome component (PCI) domainDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
L [auth G]PharosP62280
M [auth H]PharosP62249
N [auth I]PharosP62701
O [auth J]PharosP62273
P [auth K]PharosP46781
Q [auth L]PharosP62269
T [auth Q]PharosP62266
V [auth S]PharosP41091
W [auth U]PharosP46782
X [auth V]PharosP62861
Y [auth W]PharosP62851
Z [auth X]PharosP62081
AA [auth Y]PharosP42677
BA [auth Z]PharosP62277
CA [auth a]PharosP62244
C [auth 3]PharosP60228
GA [auth e]PharosP08708
HA [auth f]PharosP08865
IA [auth g]PharosP23396
JA [auth h]PharosP60866
LA [auth j]PharosP62263
NA [auth l]PharosP62857
OA [auth m]PharosP63244
PA [auth n]PharosP62841
QA [auth o]PharosP62241
RA [auth p]PharosP62979
SA [auth q]PharosP62753
TA [auth r]PharosP25398
UA [auth s]PharosP62847
VA [auth t]PharosP46783
WA [auth u]PharosP23588
F [auth 6]PharosQ9UBQ5
H [auth 8]PharosQ7L2H7