6EM5

State D architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
E [auth N]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8082481 3000210 SCOP2B (2022-06-29)
F [auth Q]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8095970 3001045 SCOP2B (2022-06-29)
G [auth R]SCOP2B SuperfamilyRibosomal protein L19 (L19e)8077485 3000890 SCOP2B (2022-06-29)
J [auth U]SCOP2B Superfamily60S Ribosomal protein L22e8053058 3002158 SCOP2B (2022-06-29)
K [auth Z]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8053046 3000334 SCOP2B (2022-06-29)
L [auth c]SCOP2B SuperfamilyL30e-like8039862 3001739 SCOP2B (2022-06-29)
P [auth g]SCOP2B SuperfamilyRibosomal protein L34e-like8053547 3002203 SCOP2B (2022-06-29)
S [auth k]SCOP2B SuperfamilyRibosomal L38e protein-like8053562 3002206 SCOP2B (2022-06-29)
T [auth E]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8053109 3000334 SCOP2B (2022-06-29)
U [auth G]SCOP2B SuperfamilyL30e-like8063962 3001739 SCOP2B (2022-06-29)
W [auth V]SCOP2B Superfamily50S Ribosomal protein L14-like8103364 3000433 SCOP2B (2022-06-29)
XSCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8095962 3000210 SCOP2B (2022-06-29)
YSCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8076760 3000334 SCOP2B (2022-06-29)
AA [auth B]SCOP2B SuperfamilyTranslational proteins8078363 3000811 SCOP2B (2022-06-29)
BA [auth C]SCOP2B Superfamily60S ribosomal protein L4 C-terminal domain-like8052815 3002143 SCOP2B (2022-06-29)
BA [auth C]SCOP2B SuperfamilyRibosomal protein L48052816 3001146 SCOP2B (2022-06-29)
KA [auth o]SCOP2B SuperfamilyRNA-binding domain RBD8061969 3000110 SCOP2B (2022-06-29)
PA [auth y]SCOP2B SuperfamilyPentein8036230 3000640 SCOP2B (2022-06-29)
EB [auth P]SCOP2B SuperfamilyRibosomal protein L228076708 3001078 SCOP2B (2022-06-29)
O [auth f]SCOP2B SuperfamilyTranslational proteins8087451 3000811 SCOP2B (2022-06-29)
V [auth O]SCOP2B SuperfamilyRibosomal protein L138066053 3001134 SCOP2B (2022-06-29)
DB [auth F]SCOP2B SuperfamilyRibosomal L30p/L7e protein N-terminal domain-lke8052916 3002152 SCOP2B (2022-06-29)
DB [auth F]SCOP2B SuperfamilyRibosomal protein L30p/L7e8052917 3001378 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
C [auth L]PF01294e6em5L1 A: extended segmentsX: RPL13 (From Topology)H: RPL13 (From Topology)T: RPL13F: PF01294ECOD (1.6)
E [auth N]PF00827e6em5N1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00827ECOD (1.6)
F [auth Q]PF17135e6em5Q1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF17135ECOD (1.6)
G [auth R]PF01280e6em5R2 A: alpha arraysX: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) N-terminal domainF: PF01280ECOD (1.6)
G [auth R]PF01280e6em5R1 A: alpha bundlesX: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) C-terminal domainF: PF01280ECOD (1.6)
H [auth S]F_UNCLASSIFIEDe6em5S1 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: F_UNCLASSIFIEDECOD (1.6)
H [auth S]PF01775e6em5S2 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: PF01775ECOD (1.6)
J [auth U]PF01776e6em5U1 A: a+b two layersX: Ribosomal protein L22e (From Topology)H: Ribosomal protein L22e (From Topology)T: Ribosomal protein L22eF: PF01776ECOD (1.6)
K [auth Z]PF01777e6em5Z1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01777ECOD (1.6)
L [auth c]PF01248e6em5c1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
M [auth d]PF01198e6em5d1 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: PF01198ECOD (1.6)
N [auth e]PF01655e6em5e1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L32e (From Topology)T: Ribosomal protein L32eF: PF01655ECOD (1.6)
P [auth g]PF01199e6em5g1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: RPL34 (From Topology)T: RPL34F: PF01199ECOD (1.6)
Q [auth i]PF01158e6em5i1 A: alpha arraysX: 60S ribosomal protein rpL36 (L36e) (From Topology)H: 60S ribosomal protein rpL36 (L36e) (From Topology)T: 60S ribosomal protein rpL36 (L36e)F: PF01158ECOD (1.6)
R [auth j]PF01907e6em5j1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01907ECOD (1.6)
S [auth k]PF01781e6em5k1 A: a+b two layersX: SRP9/14-likeH: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology)T: Signal recognition particle alu RNA binding heterodimer SRP9/14-relatedF: PF01781ECOD (1.6)
T [auth E]PF01159e6em5E1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01159ECOD (1.6)
U [auth G]PF01248e6em5G1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
W [auth V]PF00238e6em5V1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)
XPF00276,PF03939e6em5X1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276,PF03939ECOD (1.6)
YPF16906e6em5Y1 A: beta barrelsX: SH3H: SH3T: SH3F: PF16906ECOD (1.6)
AA [auth B]PF00297e6em5B1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00297ECOD (1.6)
BA [auth C]PF00573e6em5C3 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
BA [auth C]PF14374e6em5C2 A: extended segmentsX: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)T: C-terminal helical region in 60S ribosomal protein L4 (L4p)F: PF14374ECOD (1.6)
CA [auth H]PF00347e6em5H1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: PF00347ECOD (1.6)
DA [auth A]PF04427e6em5A1 A: a/b three-layered sandwichesX: Anticodon-binding domain of Class II aaRS (From Topology)H: Anticodon-binding domain of Class II aaRS (From Topology)T: Anticodon-binding domain of Class II aaRSF: PF04427ECOD (1.6)
EA [auth K]F_UNCLASSIFIEDe6em5K2 A: a+b two layersX: a+b domain in Ribosomal protein L1 (From Topology)H: a+b domain in Ribosomal protein L1 (From Topology)T: a+b domain in Ribosomal protein L1F: F_UNCLASSIFIEDECOD (1.6)
EA [auth K]PF00687e6em5K1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Rossmann-like domain in Ribosomal protein L1 (From Topology)T: Rossmann-like domain in Ribosomal protein L1F: PF00687ECOD (1.6)
GA [auth D]PF13959e6em5D2 A: alpha duplicates or obligate multimersX: RNA helicase Hera dimerization domain (From Topology)H: RNA helicase Hera dimerization domain (From Topology)T: RNA helicase Hera dimerization domainF: PF13959ECOD (1.6)
GA [auth D]PF00271e6em5D1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00271ECOD (1.6)
HA [auth W]PF00466e6em5W2 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein L10-like (From Topology)T: Ribosomal protein L10-likeF: PF00466ECOD (1.6)
HA [auth W]PF17777e6em5W1 A: a+b two layersX: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)H: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)T: Insertion domain in 60S ribosomal protein rpP0 (L10P)F: PF17777ECOD (1.6)
IA [auth l]PF03657e6em5l1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: PUA domainF: PF03657ECOD (1.6)
IA [auth l]PF17833e6em5l2 A: a+b two layersX: Cystatin-likeH: Pre-PUA domain (From Topology)T: Pre-PUA domainF: PF17833ECOD (1.6)
OA [auth t]PF00327e6em5t1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327ECOD (1.6)
PA [auth y]PF01912e6em5y1 A: a+b duplicates or obligate multimersX: Pentein (From Topology)H: Pentein (From Topology)T: PenteinF: PF01912ECOD (1.6)
RA [auth p]PF00400e6em5p1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
SA [auth q]PF22458e6em5q1 A: a+b two layersX: Alpha-beta plaitsH: NOL1/NOP2/sun N-terminal ferredoxin-like domain (From Topology)T: NOL1/NOP2/sun N-terminal ferredoxin-like domainF: PF22458ECOD (1.6)
SA [auth q]PF01189e6em5q2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: PF01189ECOD (1.6)
BB [auth 5]F_UNCLASSIFIEDe6em551 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 8-bladedF: F_UNCLASSIFIEDECOD (1.6)
EB [auth P]PF00237e6em5P1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)
O [auth f]PF01247e6em5f1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF01247ECOD (1.6)
V [auth O]PF00572e6em5O1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)
Z [auth h]PF00831e6em5h1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF00831ECOD (1.6)
D [auth M]PF00467,PF01929e6em5M1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF01929ECOD (1.6)
DB [auth F]PF00327,PF08079e6em5F1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327,PF08079ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C [auth L]PF01294Ribosomal protein L13e (Ribosomal_L13e)Ribosomal protein L13e- Family
E [auth N]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
F [auth Q]PF17135Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18)Ribosomal protein 60S L18 and 50S L18e- Family
G [auth R]PF01280Ribosomal protein L19e (Ribosomal_L19e)Ribosomal protein L19e- Family
H [auth S]PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A.Domain
I [auth T]PF01157Ribosomal protein L21e (Ribosomal_L21e)Ribosomal protein L21e- Family
J [auth U]PF01776Ribosomal L22e protein family (Ribosomal_L22e)Ribosomal L22e protein family- Family
K [auth Z]PF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein family- Family
L [auth c]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
M [auth d]PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
N [auth e]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
P [auth g]PF01199Ribosomal protein L34e (Ribosomal_L34e)Ribosomal protein L34e- Family
Q [auth i]PF01158Ribosomal protein L36e (Ribosomal_L36e)Ribosomal protein L36e- Family
R [auth j]PF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
S [auth k]PF01781Ribosomal L38e protein family (Ribosomal_L38e)Ribosomal L38e protein family- Family
T [auth E]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
U [auth G]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
W [auth V]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
PF03939Ribosomal protein L23, N-terminal domain (Ribosomal_L23eN)Ribosomal protein L23, N-terminal domain- Family
PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
PF00467KOW motif (KOW)KOW motif- Family
AA [auth B]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
BA [auth C]PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins.Domain
BA [auth C]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
CA [auth H]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
DA [auth A]PF04427Brix domain (Brix)Brix domain- Domain
EA [auth K]PF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10.Domain
FA [auth m]PF08145BOP1NT (NUC169) domain (BOP1NT)BOP1NT (NUC169) domainThis N terminal domain is found in BOP1-like WD40 proteins [1].Domain
FA [auth m]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
GA [auth D]PF13959Domain of unknown function (DUF4217) (DUF4217)Domain of unknown function (DUF4217)This short domain is found at the C-terminus of many helicase proteins.Domain
HA [auth W]PF17777Insertion domain in 60S ribosomal protein L10P (RL10P_insert)Insertion domain in 60S ribosomal protein L10PThis domain is found in prokaryotic and archaeal ribosomal L10 protein [1].Domain
HA [auth W]PF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
IA [auth l]PF03657UPF0113 PUA domain (UPF0113)UPF0113 PUA domain- Domain
IA [auth l]PF17833UPF0113 Pre-PUA domain (UPF0113_N)UPF0113 Pre-PUA domain- Domain
JA [auth b]PF08155NOGCT (NUC087) domain (NOGCT)NOGCT (NUC087) domainThis C terminal domain is found in the NOG subfamily of nucleolar GTP-binding proteins [1].Domain
JA [auth b]PF17835NOG1 N-terminal helical domain (NOG1_N)NOG1 N-terminal helical domainThis domain is found at the N-terminus of NOG1 GTPase proteins.Domain
KA [auth o]PF00076RNA recognition motif (RRM_1)RNA recognition motifThe RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ...The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins (Swiss:P05455) have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins (Swiss:P05455) are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease.
Domain
LA [auth n]PF16589BRCT domain, a BRCA1 C-terminus domain (BRCT_2)BRCT domain, a BRCA1 C-terminus domain- Family
MA [auth r]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
NA [auth s]PF08701GNL3L/Grn1 putative GTPase (GN3L_Grn1)GNL3L/Grn1 putative GTPase- Family
OA [auth t]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
PA [auth y]PF01912eIF-6 family (eIF-6)eIF-6 family- Family
QA [auth z]PF10338Protein of unknown function (DUF2423) (DUF2423)Protein of unknown function (DUF2423)- Family
RA [auth p]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
SA [auth q]PF17125N-terminal domain of 16S rRNA methyltransferase RsmF (Methyltr_RsmF_N)N-terminal domain of 16S rRNA methyltransferase RsmFThis is the N-terminal domain of the RsmF methyl transferase. RsmF is a multi-site-specific methyltransferase that is responsible for the synthesis of three modifications on cytidines in 16S ribosomal RNA. The N-terminus is critical for stabilising t ...This is the N-terminal domain of the RsmF methyl transferase. RsmF is a multi-site-specific methyltransferase that is responsible for the synthesis of three modifications on cytidines in 16S ribosomal RNA. The N-terminus is critical for stabilising the catalytic core of the enzyme [1].
Domain
SA [auth q]PF0118916S rRNA methyltransferase RsmB/F (Methyltr_RsmB-F)16S rRNA methyltransferase RsmB/F- Family
TA [auth u]PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24e- Domain
UA [auth v]PF09420Ribosome biogenesis protein Nop16 (Nop16)Ribosome biogenesis protein Nop16- Family
VA [auth w]PF01728FtsJ-like methyltransferase (FtsJ)FtsJ-like methyltransferase- Family
WA [auth I]PF03914CBF/Mak21 family (CBF)CBF/Mak21 family- Repeat
WA [auth I]PF07540Nucleolar complex-associated protein (NOC3p)Nucleolar complex-associated protein- Family
XA [auth J]PF05890Eukaryotic rRNA processing protein EBP2 (Ebp2)Eukaryotic rRNA processing protein EBP2- Family
YA [auth x]PF04427Brix domain (Brix)Brix domain- Domain
ZA [auth 3]PF01778Ribosomal L28e protein family (Ribosomal_L28e)Ribosomal L28e protein family- Family
ZA [auth 3]PF04874Mak16 protein C-terminal region (Mak16)Mak16 protein C-terminal region- Family
EB [auth P]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
O [auth f]PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35Ae- Domain
V [auth O]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
Z [auth h]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
D [auth M]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
D [auth M]PF00467KOW motif (KOW)KOW motif- Family
AB [auth 4]PF05997Nucleolar protein,Nop52 (Nop52)Nucleolar protein,Nop52- Family
DB [auth F]PF08079Ribosomal L30 N-terminal domain (Ribosomal_L30_N)Ribosomal L30 N-terminal domainThis presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1].Domain
DB [auth F]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 2]5.8S ribosomal RNA---
B [auth 6]Internal Transcribed Spacer 2---
C [auth L]60S ribosomal protein L13-A
E [auth N]60S ribosomal protein L15-A
F [auth Q]60S ribosomal protein L18-A
G [auth R]60S ribosomal protein L19-A
H [auth S]60S ribosomal protein L20-A
I [auth T]60S ribosomal protein L21-A
J [auth U]60S ribosomal protein L22-A
K [auth Z]60S ribosomal protein L27-A
L [auth c]60S ribosomal protein L30
M [auth d]60S ribosomal protein L31-A
N [auth e]60S ribosomal protein L32
P [auth g]60S ribosomal protein L34-A
Q [auth i]60S ribosomal protein L36-B
R [auth j]60S ribosomal protein L37-A
S [auth k]60S ribosomal protein L38
T [auth E]60S ribosomal protein L6-A
U [auth G]60S ribosomal protein L8-A
W [auth V]60S ribosomal protein L23-A
60S ribosomal protein L25
60S ribosomal protein L26-A
AA [auth B]60S ribosomal protein L3
BA [auth C]60S ribosomal protein L4-A
CA [auth H]60S ribosomal protein L9-A
DA [auth A]Ribosome biogenesis protein BRX1
EA [auth K]Proteasome-interacting protein CIC1
FA [auth m]Ribosome biogenesis protein ERB1
GA [auth D]ATP-dependent RNA helicase HAS1
HA [auth W]Ribosome assembly factor MRT4
IA [auth l]60S ribosome subunit biogenesis protein NIP7
JA [auth b]Nucleolar GTP-binding protein 1
KA [auth o]Ribosome biogenesis protein 15
LA [auth n]Pescadillo homolog
MA [auth r]Ribosome biogenesis protein NSA2-
NA [auth s]Nuclear GTP-binding protein NUG1
OA [auth t]Ribosome biogenesis protein RLP7
PA [auth y]Eukaryotic translation initiation factor 6
QA [auth z]UPF0642 protein YBL028C- -
RA [auth p]Ribosome biogenesis protein YTM1
SA [auth q]25S rRNA (cytosine(2870)-C(5))-methyltransferase
TA [auth u]Ribosome biogenesis protein RLP24
UA [auth v]Nucleolar protein 16-
VA [auth w]27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase
WA [auth I]Nucleolar complex-associated protein 3
XA [auth J]rRNA-processing protein EBP2
YA [auth x]Ribosome production factor 1
ZA [auth 3]Protein MAK16-
BB [auth 5]Ribosome biogenesis protein NSA1-
CB [auth 1]25S ribosomal RNA---
EB [auth P]60S ribosomal protein L17-A
O [auth f]60S ribosomal protein L33-A
V [auth O]60S ribosomal protein L16-A
Z [auth h]60S ribosomal protein L35-A
D [auth M]60S ribosomal protein L14-A
AB [auth 4]Ribosomal RNA-processing protein 1-
DB [auth F]60S ribosomal protein L7-A

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
C [auth L]IPR001380Large ribosomal subunit protein eL13Family
C [auth L]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
E [auth N]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
E [auth N]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
E [auth N]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
E [auth N]IPR000439Large ribosomal subunit protein eL15Family
F [auth Q]IPR021131Large ribosomal subunit protein uL15/eL18Domain
F [auth Q]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
F [auth Q]IPR000039Large ribosomal subunit protein eL18Family
F [auth Q]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
G [auth R]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
G [auth R]IPR039547Large ribosomal subunit protein eL19Family
G [auth R]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
G [auth R]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
G [auth R]IPR000196Large ribosomal subunit protein eL19 domainDomain
G [auth R]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
H [auth S]IPR028877Large ribosomal subunit protein eL20Family
H [auth S]IPR023573Large ribosomal subunit protein eL20 domainDomain
H [auth S]IPR021138Large ribosomal subunit protein eL20, eukaryotesFamily
I [auth T]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
I [auth T]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
I [auth T]IPR001147Large ribosomal subunit protein eL21Family
I [auth T]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
J [auth U]IPR002671Large ribosomal subunit protein eL22Family
J [auth U]IPR038526Large ribosomal subunit protein eL22 superfamilyHomologous Superfamily
K [auth Z]IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
K [auth Z]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
K [auth Z]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
K [auth Z]IPR001141Large ribosomal subunit protein eL27Family
K [auth Z]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
L [auth c]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
L [auth c]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
L [auth c]IPR039109Large ribosomal subunit protein eL30-likeFamily
L [auth c]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
M [auth d]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
M [auth d]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
M [auth d]IPR000054Large ribosomal subunit protein eL31Family
N [auth e]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
N [auth e]IPR001515Large ribosomal subunit protein eL32Family
N [auth e]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
P [auth g]IPR008195Large ribosomal subunit protein eL34Family
P [auth g]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
Q [auth i]IPR000509Large ribosomal subunit protein eL36Family
Q [auth i]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
R [auth j]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
R [auth j]IPR001569Large ribosomal subunit protein eL37Family
R [auth j]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
R [auth j]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
S [auth k]IPR002675Large ribosomal subunit protein eL38Family
S [auth k]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
T [auth E]IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
T [auth E]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
T [auth E]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
T [auth E]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
T [auth E]IPR000915Large ribosomal subunit protein eL6Family
U [auth G]IPR001921Large ribosomal subunit protein eL8Family
U [auth G]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
U [auth G]IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
U [auth G]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
U [auth G]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
W [auth V]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
W [auth V]IPR000218Large ribosomal subunit protein uL14Family
W [auth V]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
IPR013025Large ribosomal subunit protein uL23-likeFamily
IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IPR005824KOWDomain
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR005756Large ribosomal subunit protein uL24, eukaryotic/archaealFamily
IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
AA [auth B]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
AA [auth B]IPR045077Large ribosomal subunit protein uL3, archaeal/eukaryotic-typeFamily
AA [auth B]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
AA [auth B]IPR000597Large ribosomal subunit protein uL3Family
AA [auth B]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
BA [auth C]IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
BA [auth C]IPR002136Large ribosomal subunit protein uL4Family
BA [auth C]IPR013000Large ribosomal subunit protein uL4, eukaryotic/archaeal, conserved siteConserved Site
BA [auth C]IPR045240Large ribosomal subunit protein uL4, eukaryotic and archaeal typeFamily
BA [auth C]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
CA [auth H]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
CA [auth H]IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
CA [auth H]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
CA [auth H]IPR000702Large ribosomal subunit protein uL6-likeFamily
DA [auth A]IPR026532Ribosome biogenesis protein BRX1Family
DA [auth A]IPR007109Brix domainDomain
EA [auth K]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
EA [auth K]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
FA [auth m]IPR019775WD40 repeat, conserved siteConserved Site
FA [auth m]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
FA [auth m]IPR028598WD repeat BOP1/Erb1Family
FA [auth m]IPR001680WD40 repeatRepeat
FA [auth m]IPR012953BOP1, N-terminal domainDomain
FA [auth m]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
GA [auth D]IPR000629ATP-dependent RNA helicase DEAD-box, conserved siteConserved Site
GA [auth D]IPR014014RNA helicase, DEAD-box type, Q motifDomain
GA [auth D]IPR011545DEAD/DEAH box helicase domainDomain
GA [auth D]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
GA [auth D]IPR001650Helicase, C-terminal domain-likeDomain
GA [auth D]IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
GA [auth D]IPR044773DDX18/Has1, DEAD-box helicase domainDomain
GA [auth D]IPR025313Domain of unknown function DUF4217Domain
HA [auth W]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
HA [auth W]IPR001790Large ribosomal subunit protein uL10Family
HA [auth W]IPR043164Large ribosomal subunit protein uL10-like, insertion domain superfamilyHomologous Superfamily
HA [auth W]IPR040637Large ribosomal subunit protein uL10-like, insertion domainDomain
HA [auth W]IPR033867Ribosome assembly factor Mrt4Family
IA [auth l]IPR015947PUA-like superfamilyHomologous Superfamily
IA [auth l]IPR005155UPF0113, PUA domainDomain
IA [auth l]IPR016686Ribosome biogenesis factor, NIP7Family
IA [auth l]IPR036974PUA domain superfamilyHomologous Superfamily
IA [auth l]IPR04059860S ribosome subunit biogenesis protein NIP7, pre-PUA domainDomain
IA [auth l]IPR002478PUA domainDomain
JA [auth b]IPR024926Nucleolar GTP-binding protein 1Family
JA [auth b]IPR031167OBG-type guanine nucleotide-binding (G) domainDomain
JA [auth b]IPR012973NOG, C-terminalDomain
JA [auth b]IPR010674Nucleolar GTP-binding protein 1, Rossman-fold domainDomain
JA [auth b]IPR041623NOG1, N-terminal helical domainDomain
JA [auth b]IPR006073GTP binding domainDomain
JA [auth b]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
KA [auth o]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
KA [auth o]IPR000504RNA recognition motif domainDomain
KA [auth o]IPR034469Ribosome biogenesis protein 15, RNA recognition motifDomain
KA [auth o]IPR035979RNA-binding domain superfamilyHomologous Superfamily
LA [auth n]IPR010613PescadilloFamily
LA [auth n]IPR001357BRCT domainDomain
LA [auth n]IPR036420BRCT domain superfamilyHomologous Superfamily
MA [auth r]IPR039411Ribosomal biogenesis NSA2 familyFamily
MA [auth r]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
NA [auth s]IPR030378Circularly permuted (CP)-type guanine nucleotide-binding (G) domainDomain
NA [auth s]IPR006073GTP binding domainDomain
NA [auth s]IPR014813Guanine nucleotide-binding protein-like 3, N-terminal domainDomain
NA [auth s]IPR023179GTP-binding protein, orthogonal bundle domain superfamilyHomologous Superfamily
NA [auth s]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
OA [auth t]IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
OA [auth t]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
OA [auth t]IPR039699Large ribosomal subunit protein uL30Family
OA [auth t]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
OA [auth t]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
PA [auth y]IPR002769Translation initiation factor IF6Family
QA [auth z]IPR019434Domain of unknown function DUF2423Domain
RA [auth p]IPR019775WD40 repeat, conserved siteConserved Site
RA [auth p]IPR012972NLEDomain
RA [auth p]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
RA [auth p]IPR001680WD40 repeatRepeat
RA [auth p]IPR028599WD repeat WDR12/Ytm1Family
RA [auth p]IPR020472G-protein beta WD-40 repeatRepeat
RA [auth p]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
SA [auth q]IPR001678SAM-dependent methyltransferase RsmB-F/NOP2-type domainDomain
SA [auth q]IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
SA [auth q]IPR023267RNA (C5-cytosine) methyltransferaseFamily
SA [auth q]IPR011023Nop2pDomain
SA [auth q]IPR018314Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved siteConserved Site
SA [auth q]IPR031341Ribosomal RNA small subunit methyltransferase F, N-terminalDomain
SA [auth q]IPR023273RNA (C5-cytosine) methyltransferase, NOP2Family
SA [auth q]IPR049560SAM-dependent methyltransferase RsmB-F/NOP2-type, catalytic coreDomain
TA [auth u]IPR011017TRASH domainDomain
TA [auth u]IPR000988Large ribosomal subunit protein eL24-relatedFamily
TA [auth u]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
UA [auth v]IPR019002Ribosome biogenesis protein Nop16Family
VA [auth w]IPR024576Ribosomal RNA methyltransferase Spb1, domain of unknown function DUF3381Domain
VA [auth w]IPR012920Ribosomal RNA methyltransferase, SPB1-like, C-terminalDomain
VA [auth w]IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
VA [auth w]IPR002877Ribosomal RNA methyltransferase, FtsJ domainDomain
VA [auth w]IPR015507Ribosomal RNA large subunit methyltransferase EFamily
VA [auth w]IPR028589AdoMet-dependent rRNA methyltransferase SPB1-likeFamily
WA [auth I]IPR016024Armadillo-type foldHomologous Superfamily
WA [auth I]IPR016903Nucleolar complex-associated protein 3Family
WA [auth I]IPR011501Nucleolar complex-associated protein 3, N-terminalDomain
WA [auth I]IPR005612CCAAT-binding factorDomain
XA [auth J]IPR008610Eukaryotic rRNA processingFamily
YA [auth x]IPR044281U3 snoRNP protein/Ribosome production factor 1Family
YA [auth x]IPR007109Brix domainDomain
ZA [auth 3]IPR006958Mak16 proteinFamily
ZA [auth 3]IPR029004Ribosomal eL28/Mak16Domain
BB [auth 5]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
BB [auth 5]IPR037379WDR74/Nsa1Family
EB [auth P]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
EB [auth P]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
EB [auth P]IPR001063Large ribosomal subunit protein uL22Family
EB [auth P]IPR005721Large ribosomal subunit protein uL22, eukaryotic/archaealFamily
O [auth f]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
O [auth f]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
O [auth f]IPR001780Large ribosomal subunit protein eL33Family
O [auth f]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
V [auth O]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
V [auth O]IPR005822Large ribosomal subunit protein uL13Family
V [auth O]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
V [auth O]IPR005755Large ribosomal subunit protein uL13, eukaryotic/archaealFamily
Z [auth h]IPR045059Large ribosomal subunit protein uL29, eukaryotesFamily
Z [auth h]IPR001854Large ribosomal subunit protein uL29Family
Z [auth h]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
Z [auth h]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
D [auth M]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
D [auth M]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
D [auth M]IPR039660Large ribosomal subunit protein eL14Family
D [auth M]IPR041985Large ribosomal subunit protein eL14, KOW motifDomain
D [auth M]IPR002784Large ribosomal subunit protein eL14 domainDomain
D [auth M]IPR005824KOWDomain
AB [auth 4]IPR010301Ribosomal RNA processing protein 1Family
DB [auth F]IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
DB [auth F]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
DB [auth F]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotesDomain
DB [auth F]IPR039699Large ribosomal subunit protein uL30Family
DB [auth F]IPR005998Large ribosomal subunit protein uL30, eukaryoticFamily
DB [auth F]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
DB [auth F]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site