6CIL

PRE-REACTION COMPLEX, RAG1(E962Q)/2-INTACT/INTACT 12/23RSS COMPLEX IN MN2+


Protein Family Annotation Pfam Database Homepage

ChainsAccessionIdentifierDescriptionCommentsSource
A, CPF12940Recombination-activation protein 1 (RAG1), recombinase (RAG1)Recombination-activation protein 1 (RAG1), recombinase- Family
A, CPF12560RAG1 importin binding (RAG1_imp_bd)RAG1 importin binding- Family
A, CPF00097Zinc finger, C3HC4 type (RING finger) (zf-C3HC4)Zinc finger, C3HC4 type (RING finger)The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid [1]. Many protein ...The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid [1]. Many proteins containing a RING finger play a key role in the ubiquitination pathway [2].
Domain
A, CPF10426Recombination-activating protein 1 zinc-finger domain (zf-RAG1)Recombination-activating protein 1 zinc-finger domainThis is a C2-H2 zinc-finger domain closely resembling the classical TFIIIA-type zinc-finger, CX3FX5LX2-3H, despite having a valine and a tyrosine at the core instead of a phenylalanine and a leucine, hence CX3VX1LX2YX2H. The structure, nevertheless, ...This is a C2-H2 zinc-finger domain closely resembling the classical TFIIIA-type zinc-finger, CX3FX5LX2-3H, despite having a valine and a tyrosine at the core instead of a phenylalanine and a leucine, hence CX3VX1LX2YX2H. The structure, nevertheless, contains the characteristic two-stranded beta-sheet and alpha-helix of a classical zinc-finger. The domain binds one zinc and, in complex with the zinc-RING-finger domain, helps to stabilise the whole of the dimerisation region of recombination activating protein 1 (RAG1) [1]. The function of the whole is to bind double-stranded DNA.
Domain
B, DPF13341RAG2 PHD domain (RAG2_PHD)RAG2 PHD domainThis domain is found at the C-terminus of the RAG2 protein. The structure of this domain has been shown bound to histone H3 trimethylated at lysine 4 (H3K4me3) [1].Domain
B, DPF03089Recombination activating protein 2 (RAG2)Recombination activating protein 2- Family
EPF00505HMG (high mobility group) box (HMG_box)HMG (high mobility group) box- Domain
EPF09011HMG-box domain (HMG_box_2)HMG-box domainThis short 71 residue domain is an HMG-box domain. HMG-box domains mediate re-modelling of chromatin-structure. Mammalian HMG-box proteins are of two types: those that are non-sequence-specific DNA-binding proteins with two HMG-box domains and a long ...This short 71 residue domain is an HMG-box domain. HMG-box domains mediate re-modelling of chromatin-structure. Mammalian HMG-box proteins are of two types: those that are non-sequence-specific DNA-binding proteins with two HMG-box domains and a long highly acidic C-tail; and a diverse group of sequence-specific transcription factor-proteins with either a single HMG-box or up to six copies, and no acidic C-tail [1].
Domain

Gene Product Annotation Gene Product Annotation

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, CV(D)J recombination-activating protein 1
B, DV(D)J recombination-activating protein 2
NHigh mobility group protein B1
FIntact 12RSS substrate reverse strandnone none none
IIntact 12RSS substrate forward strandnone none none
GIntact 23RSS substrate reverse strandnone none none
JIntact 23RSS substrate forward strandnone none none