6CIJ
Cryo-EM structure of mouse RAG1/2 HFC complex containing partial HMGB1 linker(3.9 A)
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF12940 | e6cijA1 | A: alpha arrays | X: HTH | H: HTH | T: Ribbon-helix-helix | F: PF12940 | ECOD (1.6) |
A | PF12940 | e6cijA3 | A: alpha bundles | X: V(D)J recombination-activating protein 1 helical bundle domain (From Topology) | H: V(D)J recombination-activating protein 1 helical bundle domain (From Topology) | T: V(D)J recombination-activating protein 1 helical bundle domain | F: PF12940 | ECOD (1.6) |
A | PF12940 | e6cijA2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF12940 | ECOD (1.6) |
B [auth C] | PF12940 | e6cijC1 | A: alpha arrays | X: HTH | H: HTH | T: Ribbon-helix-helix | F: PF12940 | ECOD (1.6) |
B [auth C] | PF12940 | e6cijC2 | A: alpha bundles | X: V(D)J recombination-activating protein 1 helical bundle domain (From Topology) | H: V(D)J recombination-activating protein 1 helical bundle domain (From Topology) | T: V(D)J recombination-activating protein 1 helical bundle domain | F: PF12940 | ECOD (1.6) |
B [auth C] | PF12940 | e6cijC3 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF12940 | ECOD (1.6) |
G [auth N] | PF00505 | e6cijN1 | A: alpha arrays | X: HMG-box (From Topology) | H: HMG-box (From Topology) | T: HMG-box | F: PF00505 | ECOD (1.6) |
G [auth N] | PF09011 | e6cijN2 | A: alpha arrays | X: HMG-box (From Topology) | H: HMG-box (From Topology) | T: HMG-box | F: PF09011 | ECOD (1.6) |
I [auth D] | PF03089 | e6cijD1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 6-bladed | F: PF03089 | ECOD (1.6) |
J [auth B] | PF03089 | e6cijB1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 6-bladed | F: PF03089 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, B [auth C] | PF12940 | Recombination-activation protein 1 (RAG1), recombinase (RAG1) | Recombination-activation protein 1 (RAG1), recombinase | - | Family |
G [auth N] | PF00505 | HMG (high mobility group) box (HMG_box) | HMG (high mobility group) box | - | Domain |
I [auth D], J [auth B] | PF03089 | Recombination activating protein 2 (RAG2) | Recombination activating protein 2 | - | Repeat |