5ZQ8
Crystal structure of spRlmCD with U747 stemloop RNA
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | TRAM | e5zq8B1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: TRAM | ECOD (1.6) |
A [auth B] | Methyltransf_11_2 | e5zq8B2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: Methyltransf_11_2 | ECOD (1.6) |
B [auth A] | TRAM | e5zq8A2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: TRAM | ECOD (1.6) |
B [auth A] | Methyltransf_11_2 | e5zq8A1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: Methyltransf_11_2 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B], B [auth A] | PF05958 | tRNA (Uracil-5-)-methyltransferase (tRNA_U5-meth_tr) | tRNA (Uracil-5-)-methyltransferase | - | Family |
A [auth B], B [auth A] | PF01938 | TRAM domain (TRAM) | TRAM domain | This small domain has no known function. However it may perform a nucleic acid binding role (Bateman A. unpublished observation). | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth B], B [auth A] | IPR002792 | TRAM domain | Domain |
A [auth B], B [auth A] | IPR010280 | (Uracil-5)-methyltransferase family | Family |
A [auth B], B [auth A] | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase superfamily | Homologous Superfamily |
A [auth B], B [auth A] | IPR030391 | RNA methyltransferase TrmA, conserved site | Conserved Site |
A [auth B], B [auth A] | IPR012340 | Nucleic acid-binding, OB-fold | Homologous Superfamily |
A [auth B], B [auth A] | IPR030390 | RNA methyltransferase TrmA, active site | Active Site |