5VZ4
Receptor-growth factor crystal structure at 2.20 Angstrom resolution
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d5vz4a_ | Small proteins | Cystine-knot cytokines | Cystine-knot cytokines | automated matches | automated matches | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | TGF_beta | e5vz4A1 | A: few secondary structure elements | X: Cystine-knot cytokines (From Topology) | H: Cystine-knot cytokines (From Topology) | T: Cystine-knot cytokines | F: TGF_beta | ECOD (1.6) |
B | GDNF | e5vz4B1 | A: alpha superhelices | X: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like | H: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA | T: GDNF receptor | F: GDNF | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00019 | Transforming growth factor beta like domain (TGF_beta) | Transforming growth factor beta like domain | - | Domain | |
PF02351 | GDNF/GAS1 domain (GDNF) | GDNF/GAS1 domain | This cysteine rich domain is found in multiple copies in GNDF and GAS1 proteins. GDNF and neurturin (NTN) receptors are potent survival factors for sympathetic, sensory and central nervous system neurons [2]. GDNF and neurturin promote neuronal surv ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR029034 | Cystine-knot cytokine | Homologous Superfamily | |
IPR015615 | Transforming growth factor-beta-related | Family | |
IPR001839 | Transforming growth factor-beta, C-terminal | Domain | |
IPR037193 | GDNF receptor alpha | Homologous Superfamily | |
IPR003438 | Glial cell line-derived neurotrophic factor receptor | Family | |
IPR016017 | GDNF/GAS1 | Domain |