5MZ7
Crystal Structure of the third PDZ domain from the synaptic protein PSD-95 with incorporated Azidohomoalanine
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d5mz7a_ | All beta proteins | PDZ domain-like | PDZ domain-like | PDZ domain | Synaptic protein PSD-95 | Norway rat (Rattus norvegicus ) [TaxId: 10116 ], | SCOPe (2.08) |
B | d5mz7b_ | All beta proteins | PDZ domain-like | PDZ domain-like | PDZ domain | Synaptic protein PSD-95 | Norway rat (Rattus norvegicus ) [TaxId: 10116 ], | SCOPe (2.08) |
C | d5mz7c_ | All beta proteins | PDZ domain-like | PDZ domain-like | PDZ domain | Synaptic protein PSD-95 | Norway rat (Rattus norvegicus ) [TaxId: 10116 ], | SCOPe (2.08) |
D | d5mz7d_ | All beta proteins | PDZ domain-like | PDZ domain-like | PDZ domain | Synaptic protein PSD-95 | Norway rat (Rattus norvegicus ) [TaxId: 10116 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | PDZ domain-like | 8032563 | 3000388 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | PDZ domain-like | 8032563 | 3000388 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | PDZ domain-like | 8032563 | 3000388 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | PDZ domain-like | 8032563 | 3000388 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PDZ | e5mz7A1 | A: beta barrels | X: PDZ domain (From Topology) | H: PDZ domain (From Topology) | T: PDZ domain | F: PDZ | ECOD (1.6) |
B | PDZ | e5mz7B1 | A: beta barrels | X: PDZ domain (From Topology) | H: PDZ domain (From Topology) | T: PDZ domain | F: PDZ | ECOD (1.6) |
C | PDZ | e5mz7C1 | A: beta barrels | X: PDZ domain (From Topology) | H: PDZ domain (From Topology) | T: PDZ domain | F: PDZ | ECOD (1.6) |
D | PDZ | e5mz7D1 | A: beta barrels | X: PDZ domain (From Topology) | H: PDZ domain (From Topology) | T: PDZ domain | F: PDZ | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.30.42.10 | Mainly Beta | Roll | Pdz3 Domain | PDZ domain | CATH (4.3.0) |
B | 2.30.42.10 | Mainly Beta | Roll | Pdz3 Domain | PDZ domain | CATH (4.3.0) |
C | 2.30.42.10 | Mainly Beta | Roll | Pdz3 Domain | PDZ domain | CATH (4.3.0) |
D | 2.30.42.10 | Mainly Beta | Roll | Pdz3 Domain | PDZ domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036028 | SH3-like domain superfamily | Homologous Superfamily | |
IPR020590 | Guanylate kinase, conserved site | Conserved Site | |
IPR019583 | Disks large homolog 1-4, PDZ-associated domain | Domain | |
IPR016313 | Disks large 1-like | Family | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
IPR050614 | Synaptic Scaffolding LAP/MAGUK Families | Family | |
IPR001452 | SH3 domain | Domain | |
IPR019590 | Disks large homologue 1, N-terminal PEST domain | Domain | |
IPR008144 | Guanylate kinase-like domain | Domain | |
IPR008145 | Guanylate kinase/L-type calcium channel beta subunit | Domain | |
IPR036034 | PDZ superfamily | Homologous Superfamily | |
IPR001478 | PDZ domain | Domain |