5LZP

Binding of the C-terminal GQYL motif of the bacterial proteasome activator Bpa to the 20S proteasome


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth 0]SCOP2B SuperfamilyClass II glutamine amidotransferases8085569 3000131 SCOP2B (2022-06-29)
BA [auth S]SCOP2B SuperfamilyClass II glutamine amidotransferases8085569 3000131 SCOP2B (2022-06-29)
C [auth 2]SCOP2B SuperfamilyClass II glutamine amidotransferases8085569 3000131 SCOP2B (2022-06-29)
E [auth 4]SCOP2B SuperfamilyClass II glutamine amidotransferases8085569 3000131 SCOP2B (2022-06-29)
FA [auth W]SCOP2B SuperfamilyClass II glutamine amidotransferases8085569 3000131 SCOP2B (2022-06-29)
G [auth 6]SCOP2B SuperfamilyClass II glutamine amidotransferases8085569 3000131 SCOP2B (2022-06-29)
HA [auth Y]SCOP2B SuperfamilyClass II glutamine amidotransferases8085569 3000131 SCOP2B (2022-06-29)
I [auth 8]SCOP2B SuperfamilyClass II glutamine amidotransferases8085569 3000131 SCOP2B (2022-06-29)
K [auth B]SCOP2B SuperfamilyClass II glutamine amidotransferases8085569 3000131 SCOP2B (2022-06-29)
M [auth D]SCOP2B SuperfamilyClass II glutamine amidotransferases8085569 3000131 SCOP2B (2022-06-29)
Q [auth H]SCOP2B SuperfamilyClass II glutamine amidotransferases8085569 3000131 SCOP2B (2022-06-29)
S [auth J]SCOP2B SuperfamilyClass II glutamine amidotransferases8085569 3000131 SCOP2B (2022-06-29)
V [auth M]SCOP2B SuperfamilyClass II glutamine amidotransferases8085569 3000131 SCOP2B (2022-06-29)
Z [auth Q]SCOP2B SuperfamilyClass II glutamine amidotransferases8085569 3000131 SCOP2B (2022-06-29)
N [auth E]SCOP2B SuperfamilyClass II glutamine amidotransferases8079171 3000131 SCOP2B (2022-06-29)
AA [auth R]SCOP2B SuperfamilyClass II glutamine amidotransferases8079171 3000131 SCOP2B (2022-06-29)
CA [auth T]SCOP2B SuperfamilyClass II glutamine amidotransferases8079171 3000131 SCOP2B (2022-06-29)
DA [auth U]SCOP2B SuperfamilyClass II glutamine amidotransferases8079171 3000131 SCOP2B (2022-06-29)
J [auth A]SCOP2B SuperfamilyClass II glutamine amidotransferases8079171 3000131 SCOP2B (2022-06-29)
L [auth C]SCOP2B SuperfamilyClass II glutamine amidotransferases8079171 3000131 SCOP2B (2022-06-29)
O [auth F]SCOP2B SuperfamilyClass II glutamine amidotransferases8079171 3000131 SCOP2B (2022-06-29)
P [auth G]SCOP2B SuperfamilyClass II glutamine amidotransferases8079171 3000131 SCOP2B (2022-06-29)
R [auth I]SCOP2B SuperfamilyClass II glutamine amidotransferases8079171 3000131 SCOP2B (2022-06-29)
T [auth K]SCOP2B SuperfamilyClass II glutamine amidotransferases8079171 3000131 SCOP2B (2022-06-29)
U [auth L]SCOP2B SuperfamilyClass II glutamine amidotransferases8079171 3000131 SCOP2B (2022-06-29)
W [auth N]SCOP2B SuperfamilyClass II glutamine amidotransferases8079171 3000131 SCOP2B (2022-06-29)
X [auth O]SCOP2B SuperfamilyClass II glutamine amidotransferases8079171 3000131 SCOP2B (2022-06-29)
Y [auth P]SCOP2B SuperfamilyClass II glutamine amidotransferases8079171 3000131 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth 0]Proteasomee5lzp01 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
BA [auth S]Proteasomee5lzpS1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
C [auth 2]Proteasomee5lzp21 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
E [auth 4]Proteasomee5lzp41 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
FA [auth W]Proteasomee5lzpW1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
G [auth 6]Proteasomee5lzp61 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
HA [auth Y]Proteasomee5lzpY1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
I [auth 8]Proteasomee5lzp81 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
K [auth B]Proteasomee5lzpB1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
M [auth D]Proteasomee5lzpD1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
Q [auth H]Proteasomee5lzpH1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
S [auth J]Proteasomee5lzpJ1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
V [auth M]Proteasomee5lzpM1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
Z [auth Q]Proteasomee5lzpQ1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
N [auth E]Proteasomee5lzpE1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
AA [auth R]Proteasomee5lzpR1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
CA [auth T]Proteasomee5lzpT1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
DA [auth U]Proteasomee5lzpU1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
J [auth A]Proteasomee5lzpA1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
L [auth C]Proteasomee5lzpC1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
O [auth F]Proteasomee5lzpF1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
P [auth G]Proteasomee5lzpG1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
R [auth I]Proteasomee5lzpI1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
T [auth K]Proteasomee5lzpK1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
U [auth L]Proteasomee5lzpL1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
W [auth N]Proteasomee5lzpN1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
X [auth O]Proteasomee5lzpO1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
Y [auth P]Proteasomee5lzpP1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A [auth 0]3.60.20.10 Alpha Beta 4-Layer Sandwich Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 Aminohydrolase, N-terminal nucleophile (Ntn) domainCATH (4.3.0)
BA [auth S]3.60.20.10 Alpha Beta 4-Layer Sandwich Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 Aminohydrolase, N-terminal nucleophile (Ntn) domainCATH (4.3.0)
C [auth 2]3.60.20.10 Alpha Beta 4-Layer Sandwich Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 Aminohydrolase, N-terminal nucleophile (Ntn) domainCATH (4.3.0)
E [auth 4]3.60.20.10 Alpha Beta 4-Layer Sandwich Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 Aminohydrolase, N-terminal nucleophile (Ntn) domainCATH (4.3.0)
FA [auth W]3.60.20.10 Alpha Beta 4-Layer Sandwich Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 Aminohydrolase, N-terminal nucleophile (Ntn) domainCATH (4.3.0)
G [auth 6]3.60.20.10 Alpha Beta 4-Layer Sandwich Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 Aminohydrolase, N-terminal nucleophile (Ntn) domainCATH (4.3.0)
HA [auth Y]3.60.20.10 Alpha Beta 4-Layer Sandwich Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 Aminohydrolase, N-terminal nucleophile (Ntn) domainCATH (4.3.0)
I [auth 8]3.60.20.10 Alpha Beta 4-Layer Sandwich Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 Aminohydrolase, N-terminal nucleophile (Ntn) domainCATH (4.3.0)
K [auth B]3.60.20.10 Alpha Beta 4-Layer Sandwich Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 Aminohydrolase, N-terminal nucleophile (Ntn) domainCATH (4.3.0)
M [auth D]3.60.20.10 Alpha Beta 4-Layer Sandwich Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 Aminohydrolase, N-terminal nucleophile (Ntn) domainCATH (4.3.0)
Q [auth H]3.60.20.10 Alpha Beta 4-Layer Sandwich Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 Aminohydrolase, N-terminal nucleophile (Ntn) domainCATH (4.3.0)
S [auth J]3.60.20.10 Alpha Beta 4-Layer Sandwich Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 Aminohydrolase, N-terminal nucleophile (Ntn) domainCATH (4.3.0)
V [auth M]3.60.20.10 Alpha Beta 4-Layer Sandwich Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 Aminohydrolase, N-terminal nucleophile (Ntn) domainCATH (4.3.0)
Z [auth Q]3.60.20.10 Alpha Beta 4-Layer Sandwich Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 Aminohydrolase, N-terminal nucleophile (Ntn) domainCATH (4.3.0)
N [auth E]3.60.20.10 Alpha Beta 4-Layer Sandwich Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 Aminohydrolase, N-terminal nucleophile (Ntn) domainCATH (4.3.0)
AA [auth R]3.60.20.10 Alpha Beta 4-Layer Sandwich Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 Aminohydrolase, N-terminal nucleophile (Ntn) domainCATH (4.3.0)
CA [auth T]3.60.20.10 Alpha Beta 4-Layer Sandwich Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 Aminohydrolase, N-terminal nucleophile (Ntn) domainCATH (4.3.0)
DA [auth U]3.60.20.10 Alpha Beta 4-Layer Sandwich Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 Aminohydrolase, N-terminal nucleophile (Ntn) domainCATH (4.3.0)
J [auth A]3.60.20.10 Alpha Beta 4-Layer Sandwich Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 Aminohydrolase, N-terminal nucleophile (Ntn) domainCATH (4.3.0)
L [auth C]3.60.20.10 Alpha Beta 4-Layer Sandwich Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 Aminohydrolase, N-terminal nucleophile (Ntn) domainCATH (4.3.0)
O [auth F]3.60.20.10 Alpha Beta 4-Layer Sandwich Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 Aminohydrolase, N-terminal nucleophile (Ntn) domainCATH (4.3.0)
P [auth G]3.60.20.10 Alpha Beta 4-Layer Sandwich Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 Aminohydrolase, N-terminal nucleophile (Ntn) domainCATH (4.3.0)
R [auth I]3.60.20.10 Alpha Beta 4-Layer Sandwich Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 Aminohydrolase, N-terminal nucleophile (Ntn) domainCATH (4.3.0)
T [auth K]3.60.20.10 Alpha Beta 4-Layer Sandwich Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 Aminohydrolase, N-terminal nucleophile (Ntn) domainCATH (4.3.0)
U [auth L]3.60.20.10 Alpha Beta 4-Layer Sandwich Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 Aminohydrolase, N-terminal nucleophile (Ntn) domainCATH (4.3.0)
W [auth N]3.60.20.10 Alpha Beta 4-Layer Sandwich Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 Aminohydrolase, N-terminal nucleophile (Ntn) domainCATH (4.3.0)
X [auth O]3.60.20.10 Alpha Beta 4-Layer Sandwich Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 Aminohydrolase, N-terminal nucleophile (Ntn) domainCATH (4.3.0)
Y [auth P]3.60.20.10 Alpha Beta 4-Layer Sandwich Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 Aminohydrolase, N-terminal nucleophile (Ntn) domainCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
PF10759Bacterial proteasome activator (BPA)Bacterial proteasome activator- Family
PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Proteasome subunit alpha
Bacterial proteasome activator
Proteasome subunit beta

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
IPR022296Proteasome, alpha subunit, bacterialFamily
IPR023332Proteasome alpha-type subunitFamily
IPR001353Proteasome, subunit alpha/betaFamily
IPR019695Bacterial proteasome activatorFamily
IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
IPR023333Proteasome B-type subunitFamily
IPR022483Proteasome subunit beta, actinobacteriaFamily
IPR001353Proteasome, subunit alpha/betaFamily