5IZN
The crystal structure of 50S ribosomal protein L25 from Vibrio vulnificus CMCP6
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Ribosomal protein L25-like | 8100114 | 3001161 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Ribosomal protein L25-like | 8100114 | 3001161 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Ribosomal protein L25-like | 8100114 | 3001161 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Ribosomal protein L25-like | 8100114 | 3001161 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Ribosomal protein L25-like | 8100114 | 3001161 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Ribosomal protein L25-like | 8100114 | 3001161 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Ribosomal protein L25-like | 8100114 | 3001161 | SCOP2B (2022-06-29) |
H | SCOP2 Family | Ribosomal protein L25-like | 8100113 | 4002376 | SCOP2 (2022-06-29) |
H | SCOP2 Superfamily | Ribosomal protein L25-like | 8100114 | 3001161 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Ribosomal_L25p | e5iznA1 | A: beta barrels | X: Ribosomal protein L25-like | H: Ribosomal protein L25-like (From Topology) | T: Ribosomal protein L25-like | F: Ribosomal_L25p | ECOD (1.6) |
B | Ribosomal_L25p | e5iznB1 | A: beta barrels | X: Ribosomal protein L25-like | H: Ribosomal protein L25-like (From Topology) | T: Ribosomal protein L25-like | F: Ribosomal_L25p | ECOD (1.6) |
C | Ribosomal_L25p | e5iznC1 | A: beta barrels | X: Ribosomal protein L25-like | H: Ribosomal protein L25-like (From Topology) | T: Ribosomal protein L25-like | F: Ribosomal_L25p | ECOD (1.6) |
D | Ribosomal_L25p | e5iznD1 | A: beta barrels | X: Ribosomal protein L25-like | H: Ribosomal protein L25-like (From Topology) | T: Ribosomal protein L25-like | F: Ribosomal_L25p | ECOD (1.6) |
E | Ribosomal_L25p | e5iznE1 | A: beta barrels | X: Ribosomal protein L25-like | H: Ribosomal protein L25-like (From Topology) | T: Ribosomal protein L25-like | F: Ribosomal_L25p | ECOD (1.6) |
F | Ribosomal_L25p | e5iznF1 | A: beta barrels | X: Ribosomal protein L25-like | H: Ribosomal protein L25-like (From Topology) | T: Ribosomal protein L25-like | F: Ribosomal_L25p | ECOD (1.6) |
G | Ribosomal_L25p | e5iznG1 | A: beta barrels | X: Ribosomal protein L25-like | H: Ribosomal protein L25-like (From Topology) | T: Ribosomal protein L25-like | F: Ribosomal_L25p | ECOD (1.6) |
H | Ribosomal_L25p | e5iznH1 | A: beta barrels | X: Ribosomal protein L25-like | H: Ribosomal protein L25-like (From Topology) | T: Ribosomal protein L25-like | F: Ribosomal_L25p | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.40.240.10 | Mainly Beta | Beta Barrel | Ribosomal Protein L25 | Chain P | CATH (4.3.0) |
B | 2.40.240.10 | Mainly Beta | Beta Barrel | Ribosomal Protein L25 | Chain P | CATH (4.3.0) |
C | 2.40.240.10 | Mainly Beta | Beta Barrel | Ribosomal Protein L25 | Chain P | CATH (4.3.0) |
D | 2.40.240.10 | Mainly Beta | Beta Barrel | Ribosomal Protein L25 | Chain P | CATH (4.3.0) |
E | 2.40.240.10 | Mainly Beta | Beta Barrel | Ribosomal Protein L25 | Chain P | CATH (4.3.0) |
F | 2.40.240.10 | Mainly Beta | Beta Barrel | Ribosomal Protein L25 | Chain P | CATH (4.3.0) |
G | 2.40.240.10 | Mainly Beta | Beta Barrel | Ribosomal Protein L25 | Chain P | CATH (4.3.0) |
H | 2.40.240.10 | Mainly Beta | Beta Barrel | Ribosomal Protein L25 | Chain P | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR011035 | Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamily | Homologous Superfamily | |
IPR020055 | Ribosomal protein bL25, short-form | Family | |
IPR029751 | Large ribosomal subunit protein bL25, L25 domain | Domain | |
IPR020056 | Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminal | Homologous Superfamily | |
IPR050070 | Bacterial ribosomal protein bL25 | Family |