5ISO
STRUCTURE OF FULL LENGTH HUMAN AMPK (NON-PHOSPHORYLATED AT T-LOOP) IN COMPLEX WITH A SMALL MOLECULE ACTIVATOR, A BENZIMIDAZOLE DERIVATIVE (991)
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth E] | d5isoe1 | Alpha and beta proteins (a+b) | CBS-domain pair | CBS-domain pair | CBS-domain pair | 5'-AMP-activated protein kinase subunit gamma-1, AMPKg | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
F | d5isof1 | Alpha and beta proteins (a+b) | CBS-domain pair | CBS-domain pair | CBS-domain pair | 5'-AMP-activated protein kinase subunit gamma-1, AMPKg | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Protein kinase-like (PK-like) | 8062360 | 3000066 | SCOP2B (2022-06-29) |
D [auth C] | SCOP2B Superfamily | Protein kinase-like (PK-like) | 8062360 | 3000066 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth E] | PF00571 | e5isoE2 | A: a+b duplicates or obligate multimers | X: CBS-domain (From Topology) | H: CBS-domain (From Topology) | T: CBS-domain | F: PF00571 | ECOD (1.6) |
F | PF00571 | e5isoF1 | A: a+b duplicates or obligate multimers | X: CBS-domain (From Topology) | H: CBS-domain (From Topology) | T: CBS-domain | F: PF00571 | ECOD (1.6) |
A | PF16579 | e5isoA2 | A: a+b two layers | X: TBP-like | H: Kinase associated domain 1, KA1 (From Topology) | T: Kinase associated domain 1, KA1 | F: PF16579 | ECOD (1.6) |
A | PF00069 | e5isoA1 | A: a+b complex topology | X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology) | H: Protein kinase/SAICAR synthase/ATP-grasp | T: Protein kinase | F: PF00069 | ECOD (1.6) |
D [auth C] | PF16579 | e5isoC2 | A: a+b two layers | X: TBP-like | H: Kinase associated domain 1, KA1 (From Topology) | T: Kinase associated domain 1, KA1 | F: PF16579 | ECOD (1.6) |
D [auth C] | PF00069 | e5isoC1 | A: a+b complex topology | X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology) | H: Protein kinase/SAICAR synthase/ATP-grasp | T: Protein kinase | F: PF00069 | ECOD (1.6) |
B | PF16561 | e5isoB2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF16561 | ECOD (1.6) |
B | PF04739 | e5isoB1 | A: a+b two layers | X: AMPKBI-like (From Topology) | H: AMPKBI-like (From Topology) | T: AMPKBI-like | F: PF04739 | ECOD (1.6) |
E [auth D] | PF16561 | e5isoD2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF16561 | ECOD (1.6) |
E [auth D] | PF04739 | e5isoD1 | A: a+b two layers | X: AMPKBI-like (From Topology) | H: AMPKBI-like (From Topology) | T: AMPKBI-like | F: PF04739 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
C [auth E], F | PF00571 | CBS domain (CBS) | CBS domain | CBS domains are small intracellular modules that pair together to form a stable globular domain [2]. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain [6]. CBS domains have been shown to bind ligands ... | Domain |
A, D [auth C] | PF21147 | AMP-activated protein kinase, alpha subunit, autoinhibitory domain (AMPK_alpha_AID) | AMP-activated protein kinase, alpha subunit, autoinhibitory domain | This domain is found in the catalytic subunit (alpha) of the enzymatic complex AMP-activated protein kinase (AMPK). This protein is organised into an N-terminal kinase domain (KD, Pfam:PF00069) and a regulatory C-terminus, which contains an autoinhib ... | Domain |
A, D [auth C] | PF00069 | Protein kinase domain (Pkinase) | Protein kinase domain | - | Domain |
B, E [auth D] | PF16561 | Glycogen recognition site of AMP-activated protein kinase (AMPK1_CBM) | Glycogen recognition site of AMP-activated protein kinase | - | Family |