5G05
Cryo-EM structure of combined apo phosphorylated APC
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
L | SCOP2B Superfamily | galactose-binding domain-like | 8037020 | 3000087 | SCOP2B (2022-06-29) |
M | SCOP2 Family | Anaphase-promoting complex subunit 13 | 8047611 | 4005717 | SCOP2 (2022-06-29) |
M | SCOP2 Superfamily | Anaphase-promoting complex subunit 13 | 8093173 | 3002688 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | RING/U-box like | 8082719 | 3000160 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | TPR-like | 8057064 | 3001345 | SCOP2B (2022-06-29) |
P | SCOP2B Superfamily | TPR-like | 8057064 | 3001345 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Anaphase-promoting complex subunit 16-like | 8053719 | 3002218 | SCOP2B (2022-06-29) |
R [auth W] | SCOP2B Superfamily | CDC26-like | 8053843 | 3002235 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | CDC26-like | 8053843 | 3002235 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | WD40 repeat-like | 8106386 | 3001694 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | WD40 repeat-like | 8106386 | 3001694 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
J | PF12895 | e5g05J1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF12895 | ECOD (1.6) |
K | PF12895 | e5g05K1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF12895 | ECOD (1.6) |
N | F_UNCLASSIFIED | e5g05N3 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: F_UNCLASSIFIED | ECOD (1.6) |
N | F_UNCLASSIFIED | e5g05N4 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: F_UNCLASSIFIED | ECOD (1.6) |
N | PF00888 | e5g05N1 | A: a+b duplicates or obligate multimers | X: a+b domain in cullin-like proteins (From Topology) | H: a+b domain in cullin-like proteins (From Topology) | T: a+b domain in cullin-like proteins | F: PF00888 | ECOD (1.6) |
A | PF21282 | e5g05A5 | A: beta sandwiches | X: 26S proteasome subunit Rpn2 C-terminal domain (From Topology) | H: 26S proteasome subunit Rpn2 C-terminal domain (From Topology) | T: 26S proteasome subunit Rpn2 C-terminal domain | F: PF21282 | ECOD (1.6) |
A | PF12859 | e5g05A3 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF12859 | ECOD (1.6) |
A | PF01851 | e5g05A1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Proteasome/cyclosome (PC) repeat (From Topology) | T: Proteasome/cyclosome (PC) repeat | F: PF01851 | ECOD (1.6) |
A | PF20518 | e5g05A2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Anaphase-promoting complex subunit 1 first helical domain (From Topology) | T: Anaphase-promoting complex subunit 1 first helical domain | F: PF20518 | ECOD (1.6) |
A | PF18122 | e5g05A4 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Anaphase-promoting complex subunit 1 second helical domain (From Topology) | T: Anaphase-promoting complex subunit 1 second helical domain | F: PF18122 | ECOD (1.6) |
L | PF03256 | e5g05L1 | A: beta sandwiches | X: jelly-roll | H: Galactose-binding domain-like (From Topology) | T: Galactose-binding domain-like | F: PF03256 | ECOD (1.6) |
O | PF21371 | e5g05O2 | A: alpha arrays | X: SHQ1 C-terminal domain-like | H: Anaphase-promoting complex subunit 5 N-terminal domain (From Topology) | T: Anaphase-promoting complex subunit 5 N-terminal domain | F: PF21371 | ECOD (1.6) |
O | PF12862 | e5g05O1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF12862 | ECOD (1.6) |
T [auth Y] | F_UNCLASSIFIED | e5g05Y1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: F_UNCLASSIFIED | ECOD (1.6) |
S [auth X] | F_UNCLASSIFIED | e5g05X1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: F_UNCLASSIFIED | ECOD (1.6) |
B | PF12861 | e5g05B1 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: PF12861 | ECOD (1.6) |
C | F_UNCLASSIFIED | e5g05C2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: F_UNCLASSIFIED | ECOD (1.6) |
C | PF00515 | e5g05C3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF00515 | ECOD (1.6) |
C | PF04049 | e5g05C1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF04049 | ECOD (1.6) |
P | PF00515 | e5g05P1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF00515 | ECOD (1.6) |
P | PF04049 | e5g05P2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF04049 | ECOD (1.6) |
P | PF05598 | e5g05P3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF05598 | ECOD (1.6) |
F | PF00515,PF12895 | e5g05F1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF00515,PF12895 | ECOD (1.6) |
H | PF00515,PF12895 | e5g05H1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF00515,PF12895 | ECOD (1.6) |
I | PF12894 | e5g05I2 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF12894 | ECOD (1.6) |
I | PF12896 | e5g05I1 | A: alpha bundles | X: Four-helical up-and-down bundle | H: Helical bundle domain in anaphase-promoting complex subunit 4 (From Topology) | T: Helical bundle domain in anaphase-promoting complex subunit 4 | F: PF12896 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
J | 1.25.40.10 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | Tetratricopeptide repeat domain | CATH (4.3.0) |
K | 1.25.40.10 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | Tetratricopeptide repeat domain | CATH (4.3.0) |
L | 2.60.120.260 | Mainly Beta | Sandwich | Jelly Rolls | Galactose-binding domain-like | CATH (4.3.0) |
B | 3.30.40.10 | Alpha Beta | 2-Layer Sandwich | Herpes Virus-1 | Zinc/RING finger domain, C3HC4 (zinc finger) | CATH (4.3.0) |
C | 1.25.40.10 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | Tetratricopeptide repeat domain | CATH (4.3.0) |
P | 1.25.40.10 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | Tetratricopeptide repeat domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF15243 | Anaphase-promoting complex subunit 15 (ANAPC15) | Anaphase-promoting complex subunit 15 | - | Family | |
PF13424 | Tetratricopeptide repeat (TPR_12) | Tetratricopeptide repeat | - | Repeat | |
PF20518 | Anaphase-promoting complex subunit 1 middle domain (Apc1_MidN) | Anaphase-promoting complex subunit 1 middle domain | - | Repeat | |
PF18122 | Anaphase-promoting complex sub unit 1 C-terminal domain (APC1_C) | Anaphase-promoting complex sub unit 1 C-terminal domain | This is the C-terminal domain of chain A, also known as sub-unit 1, found in anaphase-promoting complex (APC/C) present in Homo sapiens. APC/C is an ubiquitin ligase that controls chromosome segregation and mitotic exit [1]. | Domain | |
PF21282 | APC1 beta sandwich domain (APC1_3rd) | APC1 beta sandwich domain | This domain is found close to the C-terminus of the APC1 protein which is a component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the ce ... | Domain | |
PF03256 | Anaphase-promoting complex, subunit 10 (APC10) (ANAPC10) | Anaphase-promoting complex, subunit 10 (APC10) | - | Family | |
PF05839 | Apc13p protein (Apc13p) | Apc13p protein | - | Family | |
PF12862 | Anaphase-promoting complex subunit 5 (ANAPC5) | Anaphase-promoting complex subunit 5 | - | Repeat | |
S [auth X], T [auth Y] | PF13181 | Tetratricopeptide repeat (TPR_8) | Tetratricopeptide repeat | - | Repeat |
PF12861 | Anaphase-promoting complex subunit 11 RING-H2 finger (zf-ANAPC11) | Anaphase-promoting complex subunit 11 RING-H2 finger | - | Family | |
PF04049 | Anaphase promoting complex subunit 8 / Cdc23 (ANAPC8) | Anaphase promoting complex subunit 8 / Cdc23 | - | Repeat | |
PF17256 | Anaphase-promoting complex, subunit 16 (ANAPC16) | Anaphase-promoting complex, subunit 16 | - | Family | |
PF12895 | Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3) | Anaphase-promoting complex, cyclosome, subunit 3 | - | Repeat | |
PF00515 | Tetratricopeptide repeat (TPR_1) | Tetratricopeptide repeat | - | Repeat | |
G, R [auth W] | PF10471 | Anaphase-promoting complex APC subunit CDC26 (ANAPC_CDC26) | Anaphase-promoting complex APC subunit CDC26 | - | Family |
PF12896 | Anaphase-promoting complex, cyclosome, subunit 4 (ANAPC4) | Anaphase-promoting complex, cyclosome, subunit 4 | Apc4 is one of the larger of the subunits of the anaphase-promoting complex or cyclosome. This family represents the long domain downstream of the WD40 repeat/s that are present on the Apc4 subunits. The anaphase-promoting complex is a multiprotein s ... | Domain | |
PF12894 | Anaphase-promoting complex subunit 4 WD40 domain (ANAPC4_WD40) | Anaphase-promoting complex subunit 4 WD40 domain | - | Repeat |