5E68
High resolution crystal structure of LuxS - Quorum sensor molecular complex from Salmonella typhi at 1.58 Angstroms
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d5e68a_ | Alpha and beta proteins (a+b) | LuxS/MPP-like metallohydrolase | LuxS/MPP-like metallohydrolase | Autoinducer-2 production protein LuxS | automated matches | (Salmonella enterica subsp. enterica serovar Typhi ) [TaxId: 90370 ], | SCOPe (2.08) |
B | d5e68b1 | Alpha and beta proteins (a+b) | LuxS/MPP-like metallohydrolase | LuxS/MPP-like metallohydrolase | Autoinducer-2 production protein LuxS | automated matches | (Salmonella enterica subsp. enterica serovar Typhi ) [TaxId: 90370 ], | SCOPe (2.08) |
B | d5e68b2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | (Salmonella enterica subsp. enterica serovar Typhi ) [TaxId: 90370 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | LuxS-like | 8064632 | 4003557 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | LuxS/MPP-like metallohydrolase | 8064633 | 3001831 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | LuxS/MPP-like metallohydrolase | 8064633 | 3001831 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | LuxS | e5e68A1 | A: a+b two layers | X: LuxS, MPP, ThrRS/AlaRS common domain | H: LuxS, MPP, ThrRS/AlaRS common domain | T: LuxS/MPP-like metallohydrolase | F: LuxS | ECOD (1.6) |
B | LuxS | e5e68B1 | A: a+b two layers | X: LuxS, MPP, ThrRS/AlaRS common domain | H: LuxS, MPP, ThrRS/AlaRS common domain | T: LuxS/MPP-like metallohydrolase | F: LuxS | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.1360.80 | Alpha Beta | 2-Layer Sandwich | Gyrase A | domain 2 | CATH (4.3.0) |
B | 3.30.1360.80 | Alpha Beta | 2-Layer Sandwich | Gyrase A | domain 2 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02664 | S-Ribosylhomocysteinase (LuxS) (LuxS) | S-Ribosylhomocysteinase (LuxS) | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
S-ribosylhomocysteine lyase | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR003815 | S-ribosylhomocysteinase (LuxS) | Family | |
IPR011249 | Metalloenzyme, LuxS/M16 peptidase-like | Homologous Superfamily | |
IPR037005 | S-ribosylhomocysteinase (LuxS) superfamily | Homologous Superfamily |