5DV3

Human PPARgamma ligand binding dmain complexed with SB1405 in a covalent bonded form


ChainDomainClassArchitectureTopologyHomology
A1.10.565.10 Mainly Alpha Orthogonal Bundle Retinoid X Receptor Retinoid X Receptor

Protein Family Annotation Pfam Database Homepage

ChainsAccessionIdentifierDescriptionCommentsSource
APF00105Zinc finger, C4 type (two domains) (zf-C4)Zinc finger, C4 type (two domains)In nearly all cases, this is the DNA binding domain of a nuclear hormone receptor. The alignment contains two Zinc finger domains that are too dissimilar to be aligned with each other.Domain
APF12577PPAR gamma N-terminal region (PPARgamma_N)PPAR gamma N-terminal region- Family
APF00104Ligand-binding domain of nuclear hormone receptor (Hormone_recep)Ligand-binding domain of nuclear hormone receptorThis all helical domain is involved in binding the hormone in these receptors.Domain
BPF00989PAS fold (PAS)PAS foldThe PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs [4]. The PAS fold appears in archaea, eubacteria and eukarya.Domain
BPF07469Domain of unknown function (DUF1518) (DUF1518)Domain of unknown function (DUF1518)This domain, which is usually found tandemly repeated, is found various receptor co-activating proteins.Domain
BPF00010Helix-loop-helix DNA-binding domain (HLH)Helix-loop-helix DNA-binding domain- Domain
BPF08815Nuclear receptor coactivator (Nuc_rec_co-act)Nuclear receptor coactivatorThis region is found on eukaryotic nuclear receptor coactivators and forms an alpha helical structure.Domain
BPF08832Steroid receptor coactivator (SRC-1)Steroid receptor coactivatorThis domain is found in steroid/nuclear receptor coactivators and contains two LXXLL motifs that are involved in receptor binding [1]. The family includes SRC-1/NcoA-1, NcoA-2/TIF2, pCIP/ACTR/GRIP-1/AIB1.Domain

Gene Product Annotation Gene Product Annotation

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
APeroxisome proliferator-activated receptor gamma
BNuclear receptor coactivator 1