5DCF

C-terminal domain of XerD recombinase in complex with gamma domain of FtsK

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Lambda integrase-like, catalytic core	8098375	4002347	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	DNA breaking-rejoining enzymes	8098376	3001127	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Ftsk_gamma	e5dcfA1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: Ftsk_gamma	ECOD (1.6)
A	Phage_integrase_C	e5dcfA3	A: alpha arrays	X: HTH	H: HTH	T: DNA breaking-rejoining enzymes	F: Phage_integrase_C	ECOD (1.6)
A	Phage_integrase_N	e5dcfA2	A: alpha arrays	X: HTH	H: HTH	T: DNA breaking-rejoining enzymes	F: Phage_integrase_N	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.443.10	Mainly Alpha	Orthogonal Bundle	hpI Integrase	Chain A	CATH (4.3.0)
A	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00589	Phage integrase family (Phage_integrase)	Phage integrase family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Tyrosine recombinase XerD,DNA translocase FtsK	DNA binding binding organic cyclic compound binding nucleic acid binding tyrosine-based site-specific recombinase activity integrase activity catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid catalytic activity site-specific recombinase activity	nucleobase-containing compound metabolic process resolution of DNA recombination intermediates DNA recombination metabolic process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process cellular process transposition DNA transposition plasmid recombination cell division cell cycle nucleobase-containing compound metabolic process resolution of DNA recombination intermediates DNA recombination metabolic process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process cellular process transposition DNA transposition plasmid recombination cell division cell cycle chromosome segregation cell cycle process plasmid maintenance	protein-containing complex catalytic complex endodeoxyribonuclease complex Holliday junction resolvase complex intracellular protein-containing complex endonuclease complex intracellular anatomical structure cytoplasm cellular anatomical entity

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR011010	DNA breaking-rejoining enzyme, catalytic core	Homologous Superfamily
A	IPR050090	Bacterial tyrosine recombinase XerC/XerD complex	Family
A	IPR023009	Tyrosine recombinase XerC/XerD	Family
A	IPR010998	Integrase/recombinase, N-terminal	Homologous Superfamily
A	IPR044068	Core-binding (CB) domain	Domain
A	IPR002104	Integrase, catalytic domain	Domain
A	IPR011931	Tyrosine recombinase XerC	Family
A	IPR004107	Integrase, SAM-like, N-terminal	Domain
A	IPR013762	Integrase-like, catalytic domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.