5C4I
Structure of an Oxalate Oxidoreductase
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Transketolase_C | e5c4iA2 | A: a/b three-layered sandwiches | X: TK C-terminal domain-like (From Topology) | H: TK C-terminal domain-like (From Topology) | T: TK C-terminal domain-like | F: Transketolase_C | ECOD (1.6) |
A | POR_N | e5c4iA1 | A: a/b three-layered sandwiches | X: Thiamin diphosphate-binding fold (THDP-binding) (From Topology) | H: Thiamin diphosphate-binding fold (THDP-binding) (From Topology) | T: Thiamin diphosphate-binding fold (THDP-binding) | F: POR_N | ECOD (1.6) |
D | Transketolase_C | e5c4iD2 | A: a/b three-layered sandwiches | X: TK C-terminal domain-like (From Topology) | H: TK C-terminal domain-like (From Topology) | T: TK C-terminal domain-like | F: Transketolase_C | ECOD (1.6) |
D | POR_N | e5c4iD1 | A: a/b three-layered sandwiches | X: Thiamin diphosphate-binding fold (THDP-binding) (From Topology) | H: Thiamin diphosphate-binding fold (THDP-binding) (From Topology) | T: Thiamin diphosphate-binding fold (THDP-binding) | F: POR_N | ECOD (1.6) |
B | Fer4_21_1 | e5c4iB1 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: Fer4_21_1 | ECOD (1.6) |
B | POR | e5c4iB2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | F: POR | ECOD (1.6) |
E | Fer4_21_1 | e5c4iE2 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: Fer4_21_1 | ECOD (1.6) |
E | POR | e5c4iE1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | F: POR | ECOD (1.6) |
C | TPP_enzyme_C | e5c4iC1 | A: a/b three-layered sandwiches | X: Thiamin diphosphate-binding fold (THDP-binding) (From Topology) | H: Thiamin diphosphate-binding fold (THDP-binding) (From Topology) | T: Thiamin diphosphate-binding fold (THDP-binding) | F: TPP_enzyme_C | ECOD (1.6) |
F | TPP_enzyme_C | e5c4iF1 | A: a/b three-layered sandwiches | X: Thiamin diphosphate-binding fold (THDP-binding) (From Topology) | H: Thiamin diphosphate-binding fold (THDP-binding) (From Topology) | T: Thiamin diphosphate-binding fold (THDP-binding) | F: TPP_enzyme_C | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.970 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | CATH (4.3.0) |
A | 3.40.50.920 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | CATH (4.3.0) | |
D | 3.40.50.970 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | CATH (4.3.0) |
D | 3.40.50.920 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01855 | Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg (POR_N) | Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg | - | Family | |
PF17147 | Pyruvate:ferredoxin oxidoreductase core domain II (PFOR_II) | Pyruvate:ferredoxin oxidoreductase core domain II | PFOR_II is a core domain of the anaerobic enzyme pyruvate:ferredoxin oxidoreductase and is necessary for inter subunit contacts in conjunction with domains I and IV [1,2]. | Domain | |
PF01558 | Pyruvate ferredoxin/flavodoxin oxidoreductase (POR) | Pyruvate ferredoxin/flavodoxin oxidoreductase | - | Family | |
PF00037 | 4Fe-4S binding domain (Fer4) | 4Fe-4S binding domain | Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. | Domain | |
PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain (TPP_enzyme_C) | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR033412 | Pyruvate:ferredoxin oxidoreductase, core domain II | Domain | |
IPR029061 | Thiamin diphosphate-binding fold | Homologous Superfamily | |
IPR009014 | Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II | Homologous Superfamily | |
IPR002880 | Pyruvate flavodoxin/ferredoxin oxidoreductase, pyrimidine binding domain | Domain | |
IPR017900 | 4Fe-4S ferredoxin, iron-sulphur binding, conserved site | Conserved Site | |
IPR002869 | Pyruvate-flavodoxin oxidoreductase, central domain | Homologous Superfamily | |
IPR017896 | 4Fe-4S ferredoxin-type, iron-sulphur binding domain | Domain | |
IPR011898 | 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate | Family | |
IPR019752 | Pyruvate/ketoisovalerate oxidoreductase, catalytic domain | Domain | |
IPR029061 | Thiamin diphosphate-binding fold | Homologous Superfamily | |
IPR011766 | Thiamine pyrophosphate enzyme, TPP-binding | Domain |