5BW8
2.8 A crystal structure of a Get3-Get4-Get5 intermediate complex from S.cerevisiae
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Simibi-like P-loop NTPases | 8017940 | 3002018 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Simibi-like P-loop NTPases | 8017940 | 3002018 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | TPR-like | 8090908 | 3001345 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | GET5 GET4-binding region-like | 8090909 | 3002469 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | AAA_31 | e5bw8A1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: AAA_31 | ECOD (1.6) |
B | AAA_31 | e5bw8B1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: AAA_31 | ECOD (1.6) |
C | DUF410 | e5bw8C1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: DUF410 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
B | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
C | 1.25.40.10 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | Tetratricopeptide repeat domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02374 | Anion-transporting ATPase (ArsA_ATPase) | Anion-transporting ATPase | This Pfam family represents a conserved domain, which is sometimes repeated, in an anion-transporting ATPase. The ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell. | Domain | |
PF04190 | Golgi to ER traffic protein 4 (GET4) | Golgi to ER traffic protein 4 | - | Repeat | |
PF16843 | Binding domain to Get4 on Get5, Golgi to ER traffic protein (Get5_bdg) | Binding domain to Get4 on Get5, Golgi to ER traffic protein | Get5_bdg is the binding domain at the N-terminus of Get5, or Golgi to ER traffic protein 5, in yeast, that binds to Get4. Together with Get3, this tripartite complex is involved in the insertion of tail-anchored proteins in the ER membrane [1]. | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR025723 | Anion-transporting ATPase-like domain | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
IPR027542 | Arsenical pump ATPase, ArsA/GET3, eukaryotic | Family | |
IPR016300 | Arsenical pump ATPase, ArsA/GET3 | Family | |
IPR011990 | Tetratricopeptide-like helical domain superfamily | Homologous Superfamily | |
IPR007317 | Golgi to ER traffic protein 4 | Family | |
IPR031765 | Mdy2, Get4 binding domain | Domain | |
IPR000626 | Ubiquitin-like domain | Domain | |
IPR040474 | Ubiquitin-like protein MDY2, C-terminal domain | Domain | |
IPR029071 | Ubiquitin-like domain superfamily | Homologous Superfamily |