4CIM

Complex of a Bcl-w BH3 mutant with a BH3 domain

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d4cima_	Membrane and cell surface proteins and peptides	Toxins' membrane translocation domains	Bcl-2 inhibitors of programmed cell death	Bcl-2 inhibitors of programmed cell death	automated matches	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d4cimb_	Membrane and cell surface proteins and peptides	Toxins' membrane translocation domains	Bcl-2 inhibitors of programmed cell death	Bcl-2 inhibitors of programmed cell death	automated matches	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Bcl-2-like inhibitors of programmed cell death	8036390	3001974	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Bcl-2-like inhibitors of programmed cell death	8036390	3001974	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Bcl-2	e4cimA1	A: alpha arrays	X: Toxins' membrane translocation domains	H: Bcl-2 inhibitors of programmed cell death (From Topology)	T: Bcl-2 inhibitors of programmed cell death	F: Bcl-2	ECOD (1.6)
B	Bcl-2	e4cimB1	A: alpha arrays	X: Toxins' membrane translocation domains	H: Bcl-2 inhibitors of programmed cell death (From Topology)	T: Bcl-2 inhibitors of programmed cell death	F: Bcl-2	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF02180	Bcl-2 homology region 4 (BH4)	Bcl-2 homology region 4	-	Family
A, B	PF00452	Apoptosis regulator proteins, Bcl-2 family (Bcl-2)	Apoptosis regulator proteins, Bcl-2 family	-	Family
C [auth P], D [auth Q]	PF00452	Apoptosis regulator proteins, Bcl-2 family (Bcl-2)	Apoptosis regulator proteins, Bcl-2 family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	BCL-2-LIKE PROTEIN 2	protein heterodimerization activity protein binding binding protein dimerization activity BH domain binding protein domain specific binding identical protein binding protein homodimerization activity protein-containing complex binding disordered domain specific binding	developmental process spermatogenesis sexual reproduction reproductive process multicellular organismal reproductive process developmental process involved in reproduction male gamete generation gamete generation regulation of biological process regulation of cellular process negative regulation of programmed cell death regulation of apoptotic process biological regulation negative regulation of biological process developmental process spermatogenesis sexual reproduction reproductive process multicellular organismal reproductive process developmental process involved in reproduction male gamete generation gamete generation regulation of biological process regulation of cellular process negative regulation of programmed cell death regulation of apoptotic process biological regulation negative regulation of biological process regulation of programmed cell death cell death negative regulation of apoptotic process negative regulation of cellular process cellular process apoptotic process programmed cell death response to stimulus response to stress response to ischemia Sertoli cell proliferation multicellular organismal process cell population proliferation gonad development reproductive system development sex differentiation animal organ development male gonad development male sex differentiation multicellular organism development development of primary male sexual characteristics development of primary sexual characteristics anatomical structure development reproductive structure development epithelial cell proliferation system development cellular response to stimulus signaling negative regulation of signaling negative regulation of intracellular signal transduction regulation of signal transduction regulation of intrinsic apoptotic signaling pathway intracellular signal transduction negative regulation of cell communication cell communication regulation of intracellular signal transduction negative regulation of apoptotic signaling pathway signal transduction intrinsic apoptotic signaling pathway regulation of signaling negative regulation of response to stimulus negative regulation of signal transduction negative regulation of intrinsic apoptotic signaling pathway apoptotic signaling pathway regulation of response to stimulus regulation of cell communication regulation of apoptotic signaling pathway signal transduction in absence of ligand cell surface receptor signaling pathway extrinsic apoptotic signaling pathway extrinsic apoptotic signaling pathway in absence of ligand regulation of cellular component organization apoptotic mitochondrial changes regulation of release of cytochrome c from mitochondria cellular component organization negative regulation of release of cytochrome c from mitochondria cellular component organization or biogenesis mitochondrion organization negative regulation of cellular component organization regulation of organelle organization organelle organization release of cytochrome c from mitochondria negative regulation of organelle organization regulation of mitochondrion organization cellular response to stress DNA damage response intrinsic apoptotic signaling pathway in response to DNA damage membrane organization negative regulation of mitochondrial membrane permeability transport establishment of localization mitochondrial membrane organization localization negative regulation of membrane permeability regulation of membrane permeability regulation of biological quality regulation of mitochondrial membrane permeability mitochondrial transport cellular response to acid chemical cellular response to nitrogen compound cellular response to amino acid stimulus response to organic substance response to glycine response to endogenous stimulus response to organonitrogen compound response to oxygen-containing compound response to nitrogen compound response to amino acid cellular response to glycine cellular response to oxygen-containing compound cellular response to endogenous stimulus response to acid chemical cellular response to chemical stimulus cellular response to organonitrogen compound response to chemical cellular response to organic substance response to lipid cellular response to organic cyclic compound cellular response to lipid response to estradiol cellular response to estradiol stimulus response to organic cyclic compound cellular response to amyloid-beta response to amyloid-beta	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol protein-containing complex Bcl-2 family protein complex membrane-bounded organelle mitochondrial membrane mitochondrion membrane organelle outer membrane intracellular membrane-bounded organelle intracellular organelle organelle envelope intracellular anatomical structure cytoplasm cellular anatomical entity cytosol protein-containing complex Bcl-2 family protein complex membrane-bounded organelle mitochondrial membrane mitochondrion membrane organelle outer membrane intracellular membrane-bounded organelle intracellular organelle organelle envelope bounding membrane of organelle organelle mitochondrial envelope mitochondrial outer membrane outer membrane organelle membrane
C [auth P], D [auth Q]	BCL-2-LIKE PROTEIN 2	protein heterodimerization activity protein binding binding protein dimerization activity BH domain binding protein domain specific binding identical protein binding protein homodimerization activity protein-containing complex binding disordered domain specific binding	developmental process spermatogenesis sexual reproduction reproductive process multicellular organismal reproductive process developmental process involved in reproduction male gamete generation gamete generation regulation of biological process regulation of cellular process negative regulation of programmed cell death regulation of apoptotic process biological regulation negative regulation of biological process developmental process spermatogenesis sexual reproduction reproductive process multicellular organismal reproductive process developmental process involved in reproduction male gamete generation gamete generation regulation of biological process regulation of cellular process negative regulation of programmed cell death regulation of apoptotic process biological regulation negative regulation of biological process regulation of programmed cell death cell death negative regulation of apoptotic process negative regulation of cellular process cellular process apoptotic process programmed cell death response to stimulus response to stress response to ischemia Sertoli cell proliferation multicellular organismal process cell population proliferation gonad development reproductive system development sex differentiation animal organ development male gonad development male sex differentiation multicellular organism development development of primary male sexual characteristics development of primary sexual characteristics anatomical structure development reproductive structure development epithelial cell proliferation system development cellular response to stimulus signaling negative regulation of signaling negative regulation of intracellular signal transduction regulation of signal transduction regulation of intrinsic apoptotic signaling pathway intracellular signal transduction negative regulation of cell communication cell communication regulation of intracellular signal transduction negative regulation of apoptotic signaling pathway signal transduction intrinsic apoptotic signaling pathway regulation of signaling negative regulation of response to stimulus negative regulation of signal transduction negative regulation of intrinsic apoptotic signaling pathway apoptotic signaling pathway regulation of response to stimulus regulation of cell communication regulation of apoptotic signaling pathway signal transduction in absence of ligand cell surface receptor signaling pathway extrinsic apoptotic signaling pathway extrinsic apoptotic signaling pathway in absence of ligand regulation of cellular component organization apoptotic mitochondrial changes regulation of release of cytochrome c from mitochondria cellular component organization negative regulation of release of cytochrome c from mitochondria cellular component organization or biogenesis mitochondrion organization negative regulation of cellular component organization regulation of organelle organization organelle organization release of cytochrome c from mitochondria negative regulation of organelle organization regulation of mitochondrion organization cellular response to stress DNA damage response intrinsic apoptotic signaling pathway in response to DNA damage membrane organization negative regulation of mitochondrial membrane permeability transport establishment of localization mitochondrial membrane organization localization negative regulation of membrane permeability regulation of membrane permeability regulation of biological quality regulation of mitochondrial membrane permeability mitochondrial transport cellular response to acid chemical cellular response to nitrogen compound cellular response to amino acid stimulus response to organic substance response to glycine response to endogenous stimulus response to organonitrogen compound response to oxygen-containing compound response to nitrogen compound response to amino acid cellular response to glycine cellular response to oxygen-containing compound cellular response to endogenous stimulus response to acid chemical cellular response to chemical stimulus cellular response to organonitrogen compound response to chemical cellular response to organic substance response to lipid cellular response to organic cyclic compound cellular response to lipid response to estradiol cellular response to estradiol stimulus response to organic cyclic compound cellular response to amyloid-beta response to amyloid-beta	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol protein-containing complex Bcl-2 family protein complex membrane-bounded organelle mitochondrial membrane mitochondrion membrane organelle outer membrane intracellular membrane-bounded organelle intracellular organelle organelle envelope intracellular anatomical structure cytoplasm cellular anatomical entity cytosol protein-containing complex Bcl-2 family protein complex membrane-bounded organelle mitochondrial membrane mitochondrion membrane organelle outer membrane intracellular membrane-bounded organelle intracellular organelle organelle envelope bounding membrane of organelle organelle mitochondrial envelope mitochondrial outer membrane outer membrane organelle membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR020726	Apoptosis regulator, Bcl-2, BH2 motif, conserved site	Conserved Site
A, B	IPR036834	Bcl-2-like superfamily	Homologous Superfamily
A, B	IPR046371	Bcl-2, Bcl-2 homology region 1-3	Domain
A, B	IPR003093	Apoptosis regulator, Bcl-2 protein, BH4	Domain
A, B	IPR002475	Bcl2-like	Family
A, B	IPR020731	Apoptosis regulator, Bcl-2, BH4 motif, conserved site	Conserved Site
A, B	IPR026298	Bcl-2 family	Family
A, B	IPR020717	Apoptosis regulator, Bcl-2, BH1 motif, conserved site	Conserved Site
A, B	IPR013280	Apoptosis regulator, Bcl-W	Family
C [auth P], D [auth Q]	IPR020726	Apoptosis regulator, Bcl-2, BH2 motif, conserved site	Conserved Site
C [auth P], D [auth Q]	IPR036834	Bcl-2-like superfamily	Homologous Superfamily
C [auth P], D [auth Q]	IPR046371	Bcl-2, Bcl-2 homology region 1-3	Domain
C [auth P], D [auth Q]	IPR003093	Apoptosis regulator, Bcl-2 protein, BH4	Domain
C [auth P], D [auth Q]	IPR002475	Bcl2-like	Family
C [auth P], D [auth Q]	IPR020731	Apoptosis regulator, Bcl-2, BH4 motif, conserved site	Conserved Site
C [auth P], D [auth Q]	IPR026298	Bcl-2 family	Family
C [auth P], D [auth Q]	IPR020717	Apoptosis regulator, Bcl-2, BH1 motif, conserved site	Conserved Site
C [auth P], D [auth Q]	IPR013280	Apoptosis regulator, Bcl-W	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: Q92843	psoriasis acute myeloid leukemia atypical teratoid rhabdoid tumor glioblastoma lung adenocarcinoma malignant glioma oligodendroglioma pilocytic astrocytoma astrocytic tumor B-cell chronic lymphocytic leukemia invasive ductal breast carcinoma malignant colon neoplasm Malignant lymphoma - small lymphocytic osteosarcoma primitive neuroectodermal tumor psoriasis acute myeloid leukemia atypical teratoid rhabdoid tumor glioblastoma lung adenocarcinoma malignant glioma oligodendroglioma pilocytic astrocytoma astrocytic tumor B-cell chronic lymphocytic leukemia invasive ductal breast carcinoma malignant colon neoplasm Malignant lymphoma - small lymphocytic osteosarcoma primitive neuroectodermal tumor atrial fibrillation facioscapulohumeral muscular dystrophy large cell medulloblastoma malignant ependymoma medulloblastoma ovarian cancer
C [auth P], D [auth Q]	Pharos: Q92843	psoriasis acute myeloid leukemia atypical teratoid rhabdoid tumor glioblastoma lung adenocarcinoma malignant glioma oligodendroglioma pilocytic astrocytoma astrocytic tumor B-cell chronic lymphocytic leukemia invasive ductal breast carcinoma malignant colon neoplasm Malignant lymphoma - small lymphocytic osteosarcoma primitive neuroectodermal tumor psoriasis acute myeloid leukemia atypical teratoid rhabdoid tumor glioblastoma lung adenocarcinoma malignant glioma oligodendroglioma pilocytic astrocytoma astrocytic tumor B-cell chronic lymphocytic leukemia invasive ductal breast carcinoma malignant colon neoplasm Malignant lymphoma - small lymphocytic osteosarcoma primitive neuroectodermal tumor atrial fibrillation facioscapulohumeral muscular dystrophy large cell medulloblastoma malignant ependymoma medulloblastoma ovarian cancer

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.