4YII
Structure of an APC2-UBCH10 complex reveals distinctive cullin-RING ligase mechanism for Anaphase-promoting complex/Cyclosome
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth U] | d4yiiu_ | Alpha and beta proteins (a+b) | UBC-like | UBC-like | automated matches | automated matches | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth U] | SCOP2B Superfamily | UBC-like | 8033738 | 3000570 | SCOP2B (2022-06-29) |
B [auth A] | SCOP2 Family | SCF complex WHB domain-like | 8084655 | 4000322 | SCOP2 (2022-06-29) |
B [auth A] | SCOP2 Superfamily | Winged helix DNA-binding domain | 8084656 | 3000034 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth U] | UQ_con | e4yiiU1 | A: a+b two layers | X: UBC-like | H: UBC-like (From Topology) | T: UBC-like | F: UQ_con | ECOD (1.6) |
B [auth A] | ANAPC2 | e4yiiA1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: ANAPC2 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth U] | 3.10.110.10 | Alpha Beta | Roll | Ubiquitin Conjugating Enzyme | Ubiquitin Conjugating Enzyme | CATH (4.3.0) |
B [auth A] | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth U] | PF00179 | Ubiquitin-conjugating enzyme (UQ_con) | Ubiquitin-conjugating enzyme | Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cystein ... | Domain |
B [auth A] | PF08672 | Anaphase promoting complex (APC) subunit 2 (ANAPC2) | Anaphase promoting complex (APC) subunit 2 | The anaphase promoting complex or cyclosome (APC2) is an E3 ubiquitin ligase which is part of the SCF family of ubiquitin ligases. Ubiquitin ligases catalyse the transfer of ubiquitin from the ubiquitin conjugating enzyme (E2), to the substrate prot ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth U] | IPR050113 | Ubiquitin-conjugating enzyme | Family |
A [auth U] | IPR016135 | Ubiquitin-conjugating enzyme/RWD-like | Homologous Superfamily |
A [auth U] | IPR000608 | Ubiquitin-conjugating enzyme E2 | Domain |
A [auth U] | IPR023313 | Ubiquitin-conjugating enzyme, active site | Active Site |
B [auth A] | IPR014786 | Anaphase-promoting complex subunit 2, C-terminal | Domain |
B [auth A] | IPR016158 | Cullin homology domain | Domain |
B [auth A] | IPR001373 | Cullin, N-terminal | Domain |
B [auth A] | IPR036388 | Winged helix-like DNA-binding domain superfamily | Homologous Superfamily |
B [auth A] | IPR036390 | Winged helix DNA-binding domain superfamily | Homologous Superfamily |
B [auth A] | IPR036317 | Cullin homology domain superfamily | Homologous Superfamily |
B [auth A] | IPR044554 | Anaphase-promoting complex subunit 2 | Family |