4XHJ
gHgL of Varicella-zoster virus in complex with human neutralizing antibodies.
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C | d4xhjc2 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | C1 set domains (antibody constant domain-like) | automated matches | (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
C | d4xhjc1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | automated matches | automated matches | (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
G | d4xhjg2 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | C1 set domains (antibody constant domain-like) | automated matches | (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
G | d4xhjg1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | automated matches | automated matches | (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | Interleukin 8-like chemokines | 8092035 | 3001955 | SCOP2B (2022-06-29) |
F | SCOP2 Family | HSV envelope glycoprotein L-like | 8046999 | 4005407 | SCOP2 (2022-06-29) |
F | SCOP2 Superfamily | Interleukin 8-like chemokines | 8092035 | 3001955 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Herpes_glycoH_C | e4xhjA1 | A: beta sandwiches | X: C-terminal domain of envelope glycoprotein H (From Topology) | H: C-terminal domain of envelope glycoprotein H (From Topology) | T: C-terminal domain of envelope glycoprotein H | F: Herpes_glycoH_C | ECOD (1.6) |
A | Herpes_glycop_H | e4xhjA2 | A: a+b complex topology | X: gH main domain (From Topology) | H: gH main domain (From Topology) | T: gH main domain | F: Herpes_glycop_H | ECOD (1.6) |
E | Herpes_glycoH_C | e4xhjE1 | A: beta sandwiches | X: C-terminal domain of envelope glycoprotein H (From Topology) | H: C-terminal domain of envelope glycoprotein H (From Topology) | T: C-terminal domain of envelope glycoprotein H | F: Herpes_glycoH_C | ECOD (1.6) |
E | Herpes_glycop_H | e4xhjE2 | A: a+b complex topology | X: gH main domain (From Topology) | H: gH main domain (From Topology) | T: gH main domain | F: Herpes_glycop_H | ECOD (1.6) |
B | Herpes_UL1 | e4xhjB1 | A: a+b complex topology | X: gH main domain (From Topology) | H: gH main domain (From Topology) | T: gH main domain | F: Herpes_UL1 | ECOD (1.6) |
F | Herpes_UL1 | e4xhjF1 | A: a+b complex topology | X: gH main domain (From Topology) | H: gH main domain (From Topology) | T: gH main domain | F: Herpes_UL1 | ECOD (1.6) |
C | C1-set_4 | e4xhjC2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
C | V-set | e4xhjC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
G | C1-set_4 | e4xhjG1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
G | V-set | e4xhjG2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
D | V-set_8 | e4xhjD2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
D | C1-set_1 | e4xhjD3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
H | V-set_8 | e4xhjH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
H | C1-set_1 | e4xhjH2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
G | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
D | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
H | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF17488 | Herpesvirus glycoprotein H C-terminal domain (Herpes_glycoH_C) | Herpesvirus glycoprotein H C-terminal domain | Herpesvirus glycoprotein H (gH) is a virion associated envelope glycoprotein [2]. Complex formation between gH and gL has been demonstrated in both virions and infected cells [1]. This entry represents the C-terminal domain. | Domain | |
PF02489 | Herpesvirus glycoprotein H main domain (Herpes_glycop_H) | Herpesvirus glycoprotein H main domain | Herpesvirus glycoprotein H (gH) is a virion associated envelope glycoprotein [2]. Complex formation between gH and gL has been demonstrated in both virions and infected cells [1]. | Domain | |
PF05259 | Herpesvirus glycoprotein L (Herpes_UL1) | Herpesvirus glycoprotein L | - | Family | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR038172 | Herpesvirus glycoprotein H, C-terminal domain superfamily | Homologous Superfamily | |
IPR003493 | Herpesvirus glycoprotein H | Family | |
IPR035305 | Herpesvirus glycoprotein H, C-terminal | Domain | |
IPR038311 | Herpesvirus glycoprotein L, N-terminal domain superfamily | Homologous Superfamily | |
IPR034708 | Envelope glycoprotein L | Family | |
IPR007923 | Herpesvirus glycoprotein L, N-terminal | Domain |