4WKG
The crystal structure of apo ArnA features an unexpected central binding pocket and provides an explanation for enzymatic coop-erativity
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Formyltransferase | 8057772 | 3000030 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | SDR-like | 8057775 | 3000038 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | FMT C-terminal domain-like | 8057773 | 3000015 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Formyltransferase | 8057772 | 3000030 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | SDR-like | 8057775 | 3000038 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | FMT C-terminal domain-like | 8057773 | 3000015 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | SDR-like | 8057775 | 3000038 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Formyltransferase | 8057772 | 3000030 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | FMT C-terminal domain-like | 8057773 | 3000015 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | SDR-like | 8057775 | 3000038 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Formyltransferase | 8057772 | 3000030 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | FMT C-terminal domain-like | 8057773 | 3000015 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | FMT C-terminal domain-like | 8057773 | 3000015 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | SDR-like | 8057775 | 3000038 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Formyltransferase | 8057772 | 3000030 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Formyltransferase | 8057772 | 3000030 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | FMT C-terminal domain-like | 8057773 | 3000015 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | SDR-like | 8057775 | 3000038 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Formyl_trans_C | e4wkgA1 | A: beta barrels | X: FMT C-terminal domain-like | H: FMT C-terminal domain-related (From Topology) | T: FMT C-terminal domain-related | F: Formyl_trans_C | ECOD (1.6) |
A | GDP_Man_Dehyd_1 | e4wkgA3 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: NAD(P)-binding Rossmann-fold domains | F: GDP_Man_Dehyd_1 | ECOD (1.6) |
A | Formyl_trans_N | e4wkgA2 | A: a/b three-layered sandwiches | X: Formyltransferase (From Topology) | H: Formyltransferase (From Topology) | T: Formyltransferase | F: Formyl_trans_N | ECOD (1.6) |
B | Formyl_trans_C | e4wkgB1 | A: beta barrels | X: FMT C-terminal domain-like | H: FMT C-terminal domain-related (From Topology) | T: FMT C-terminal domain-related | F: Formyl_trans_C | ECOD (1.6) |
B | GDP_Man_Dehyd_1 | e4wkgB3 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: NAD(P)-binding Rossmann-fold domains | F: GDP_Man_Dehyd_1 | ECOD (1.6) |
B | Formyl_trans_N | e4wkgB2 | A: a/b three-layered sandwiches | X: Formyltransferase (From Topology) | H: Formyltransferase (From Topology) | T: Formyltransferase | F: Formyl_trans_N | ECOD (1.6) |
C | Formyl_trans_C | e4wkgC1 | A: beta barrels | X: FMT C-terminal domain-like | H: FMT C-terminal domain-related (From Topology) | T: FMT C-terminal domain-related | F: Formyl_trans_C | ECOD (1.6) |
C | GDP_Man_Dehyd_1 | e4wkgC3 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: NAD(P)-binding Rossmann-fold domains | F: GDP_Man_Dehyd_1 | ECOD (1.6) |
C | Formyl_trans_N | e4wkgC2 | A: a/b three-layered sandwiches | X: Formyltransferase (From Topology) | H: Formyltransferase (From Topology) | T: Formyltransferase | F: Formyl_trans_N | ECOD (1.6) |
D | Formyl_trans_C | e4wkgD1 | A: beta barrels | X: FMT C-terminal domain-like | H: FMT C-terminal domain-related (From Topology) | T: FMT C-terminal domain-related | F: Formyl_trans_C | ECOD (1.6) |
D | GDP_Man_Dehyd_1 | e4wkgD3 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: NAD(P)-binding Rossmann-fold domains | F: GDP_Man_Dehyd_1 | ECOD (1.6) |
D | Formyl_trans_N | e4wkgD2 | A: a/b three-layered sandwiches | X: Formyltransferase (From Topology) | H: Formyltransferase (From Topology) | T: Formyltransferase | F: Formyl_trans_N | ECOD (1.6) |
E | Formyl_trans_C | e4wkgE1 | A: beta barrels | X: FMT C-terminal domain-like | H: FMT C-terminal domain-related (From Topology) | T: FMT C-terminal domain-related | F: Formyl_trans_C | ECOD (1.6) |
E | GDP_Man_Dehyd_1 | e4wkgE3 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: NAD(P)-binding Rossmann-fold domains | F: GDP_Man_Dehyd_1 | ECOD (1.6) |
E | Formyl_trans_N | e4wkgE2 | A: a/b three-layered sandwiches | X: Formyltransferase (From Topology) | H: Formyltransferase (From Topology) | T: Formyltransferase | F: Formyl_trans_N | ECOD (1.6) |
F | Formyl_trans_C | e4wkgF1 | A: beta barrels | X: FMT C-terminal domain-like | H: FMT C-terminal domain-related (From Topology) | T: FMT C-terminal domain-related | F: Formyl_trans_C | ECOD (1.6) |
F | GDP_Man_Dehyd_1 | e4wkgF3 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: NAD(P)-binding Rossmann-fold domains | F: GDP_Man_Dehyd_1 | ECOD (1.6) |
F | Formyl_trans_N | e4wkgF2 | A: a/b three-layered sandwiches | X: Formyltransferase (From Topology) | H: Formyltransferase (From Topology) | T: Formyltransferase | F: Formyl_trans_N | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02911 | Formyl transferase, C-terminal domain (Formyl_trans_C) | Formyl transferase, C-terminal domain | - | Domain | |
PF01370 | NAD dependent epimerase/dehydratase family (Epimerase) | NAD dependent epimerase/dehydratase family | - | Family | |
PF00551 | Formyl transferase (Formyl_trans_N) | Formyl transferase | This family includes the following members. Glycinamide ribonucleotide transformylase catalyses the third step in de novo purine biosynthesis, the transfer of a formyl group to 5'-phosphoribosylglycinamide. Formyltetrahydrofolate deformylase produces ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR050177 | Bifunctional lipid A modification and metabolic enzymes | Family | |
IPR045869 | Bifunctional polymyxin resistance protein ArnA-like, extended (e) SDRs | Domain | |
IPR036477 | Formyl transferase, N-terminal domain superfamily | Homologous Superfamily | |
IPR021168 | Bifunctional polymyxin resistance protein, ArnA | Family | |
IPR036291 | NAD(P)-binding domain superfamily | Homologous Superfamily | |
IPR001509 | NAD-dependent epimerase/dehydratase | Domain | |
IPR002376 | Formyl transferase, N-terminal | Domain | |
IPR005793 | Formyl transferase, C-terminal | Domain | |
IPR011034 | Formyl transferase-like, C-terminal domain superfamily | Homologous Superfamily |