4WFC
Structure of the Rrp6-Rrp47 interaction
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Rrp6-Rrp47 interacting regions-like | 8055988 | 3002328 | SCOP2B (2022-06-29) |
C | SCOP2 Family | Rrp6 N-terminal region-like | 8050302 | 4006839 | SCOP2 (2022-06-29) |
C | SCOP2 Superfamily | Rrp6-Rrp47 interacting regions-like | 8055988 | 3002328 | SCOP2 (2022-06-29) |
B | SCOP2 Family | Rrp47-like | 8045112 | 4004296 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | Rrp6-Rrp47 interacting regions-like | 8055987 | 3002328 | SCOP2 (2022-06-29) |
D | SCOP2B Superfamily | Rrp6-Rrp47 interacting regions-like | 8055987 | 3002328 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PMC2NT | e4wfcA1 | A: extended segments | X: Exosome complex exonuclease RRP6 N-terminal domain (From Topology) | H: Exosome complex exonuclease RRP6 N-terminal domain (From Topology) | T: Exosome complex exonuclease RRP6 N-terminal domain | F: PMC2NT | ECOD (1.6) |
C | PMC2NT | e4wfcC1 | A: extended segments | X: Exosome complex exonuclease RRP6 N-terminal domain (From Topology) | H: Exosome complex exonuclease RRP6 N-terminal domain (From Topology) | T: Exosome complex exonuclease RRP6 N-terminal domain | F: PMC2NT | ECOD (1.6) |
E | PMC2NT | e4wfcE1 | A: extended segments | X: Exosome complex exonuclease RRP6 N-terminal domain (From Topology) | H: Exosome complex exonuclease RRP6 N-terminal domain (From Topology) | T: Exosome complex exonuclease RRP6 N-terminal domain | F: PMC2NT | ECOD (1.6) |
B | Sas10_Utp3 | e4wfcB1 | A: extended segments | X: Exosome complex protein LRP1 (From Topology) | H: Exosome complex protein LRP1 (From Topology) | T: Exosome complex protein LRP1 | F: Sas10_Utp3 | ECOD (1.6) |
D | Sas10_Utp3 | e4wfcD1 | A: extended segments | X: Exosome complex protein LRP1 (From Topology) | H: Exosome complex protein LRP1 (From Topology) | T: Exosome complex protein LRP1 | F: Sas10_Utp3 | ECOD (1.6) |
F | Sas10_Utp3 | e4wfcF1 | A: extended segments | X: Exosome complex protein LRP1 (From Topology) | H: Exosome complex protein LRP1 (From Topology) | T: Exosome complex protein LRP1 | F: Sas10_Utp3 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF08066 | PMC2NT (NUC016) domain (PMC2NT) | PMC2NT (NUC016) domain | This domain is found at the N-terminus of 3'-5' exonucleases with HRDC domains, and also in putative exosome components [1]. | Domain | |
PF04000 | Sas10/Utp3/C1D family (Sas10_Utp3) | Sas10/Utp3/C1D family | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036397 | Ribonuclease H superfamily | Homologous Superfamily | |
IPR002121 | HRDC domain | Domain | |
IPR012588 | Exosome-associated factor Rrp6, N-terminal | Domain | |
IPR012337 | Ribonuclease H-like superfamily | Homologous Superfamily | |
IPR045092 | Exosome complex exonuclease Rrp6-like | Family | |
IPR002562 | 3'-5' exonuclease domain | Domain | |
IPR049559 | Rrp6-like, 3'-5' exonuclease domain | Domain | |
IPR010997 | HRDC-like superfamily | Homologous Superfamily | |
IPR044876 | HRDC domain superfamily | Homologous Superfamily | |
IPR011082 | Exosome-associated factor Rrp47/DNA strand repair C1D | Family | |
IPR007146 | Sas10/Utp3/C1D | Family |