4U0Y
Crystal structure of the DNA-binding domains of YvoA in complex with palindromic operator DNA
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | GntR-like transcriptional regulators | 8085679 | 4000155 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Winged helix DNA-binding domain | 8085680 | 3000034 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | Winged helix DNA-binding domain | 8085680 | 3000034 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Winged helix DNA-binding domain | 8085680 | 3000034 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Winged helix DNA-binding domain | 8085680 | 3000034 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | GntR | e4u0yA1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: GntR | ECOD (1.6) |
B | GntR | e4u0yB1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: GntR | ECOD (1.6) |
C | GntR | e4u0yC1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: GntR | ECOD (1.6) |
D | GntR | e4u0yD1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: GntR | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (4.3.0) |
B | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (4.3.0) |
C | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (4.3.0) |
D | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00392 | Bacterial regulatory proteins, gntR family (GntR) | Bacterial regulatory proteins, gntR family | This family of regulatory proteins consists of the N-terminal HTH region of GntR-like bacterial transcription factors. At the C-terminus there is usually an effector-binding/oligomerisation domain. The GntR-like proteins include the following sub-fam ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR050679 | Bacterial HTH-type transcriptional regulator | Family | |
IPR011663 | UbiC transcription regulator-associated | Domain | |
IPR028978 | Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily | Homologous Superfamily | |
IPR036388 | Winged helix-like DNA-binding domain superfamily | Homologous Superfamily | |
IPR000524 | Transcription regulator HTH, GntR | Domain | |
IPR036390 | Winged helix DNA-binding domain superfamily | Homologous Superfamily |