Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AKOG3161_2nde4txaA4 A: alpha arraysX: HTHH: HTHT: tri-helicalF: KOG3161_2ndECOD (1.6)
AKOG3161_1ste4txaA3 A: alpha arraysX: HTHH: HTHT: wingedF: KOG3161_1stECOD (1.6)
AKOG3161_3rde4txaA2 A: alpha bundlesX: Four-helical up-and-down bundleH: Helical bundle in ROQ domain (From Topology)T: Helical bundle in ROQ domainF: KOG3161_3rdECOD (1.6)
Azf-C3HC4_4e4txaA1 A: few secondary structure elementsX: RING/U-box-likeH: RING/U-box-likeT: RING/U-boxF: zf-C3HC4_4ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF18386Roquin II domain (ROQ_II)Roquin II domainThe ROQ domain is composed of three subdomains, I, II and III. This entry describes the second domain, ROQ II. Structural analysis reveals similarity of domain II to the helix-turn-helix (HTH) fold. Mutagenesis and biochemical studies show that that ...The ROQ domain is composed of three subdomains, I, II and III. This entry describes the second domain, ROQ II. Structural analysis reveals similarity of domain II to the helix-turn-helix (HTH) fold. Mutagenesis and biochemical studies show that that the HTH fold in domain II contributes to binding dsRNA at the 5'arm [1].
Domain
PF14634zinc-RING finger domain (zf-RING_5)zinc-RING finger domain- Domain
PF21206Roquin 1/2-like, ROQ domain (Roquin_1_2-like_ROQ)Roquin 1/2-like, ROQ domainThis domain is found in Roquin-1/2 from humans and in other eukaryotic RING-E3 ubiquitin ligases and transferases. These paralogous proteins Roquin-1/2 recruit the deadenylation and decapping machineries to initiate mRNA degradation. They play a cent ...This domain is found in Roquin-1/2 from humans and in other eukaryotic RING-E3 ubiquitin ligases and transferases. These paralogous proteins Roquin-1/2 recruit the deadenylation and decapping machineries to initiate mRNA degradation. They play a central role in repressing autoimmunity. The ROQ domain, highly conserved, is required for RNA binding and shows a mostly helical structure with a small three-stranded beta-sheet. It bears a winged helix-turn-helix motif, which is involved in the binding of constitutive decay elements-containing stem-loop mRNAs [1-5].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Roquin-1