4S2Q

Crystal Structure of HMG domain of the chondrogenesis master regulator, Sox9 in complex with ChIP-Seq identified DNA element

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
C [auth D]SCOP2 FamilyHMG-box8073209 4000788 SCOP2 (2022-06-29)
C [auth D]SCOP2 SuperfamilyHMG-box8073210 3001368 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
C [auth D]HMG_boxe4s2qD1 A: alpha arraysX: HMG-box (From Topology)H: HMG-box (From Topology)T: HMG-boxF: HMG_boxECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
C [auth D]1.10.30.10 Mainly Alpha Orthogonal Bundle DNA Binding (I), subunit A High mobility group box domainCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C [auth D]PF00505HMG (high mobility group) box (HMG_box)HMG (high mobility group) box- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
DNA (5'-D(P*AP*GP*GP*CP*TP*TP*TP*GP*TP*TP*CP*TP*CP*CP*TP*G)-3')---
DNA (5'-D(P*AP*GP*GP*AP*GP*AP*AP*CP*AP*AP*AP*GP*CP*CP*TP*G)-3')---
C [auth D]Transcription factor SOX-9

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
C [auth D]IPR036910High mobility group box domain superfamilyHomologous Superfamily
C [auth D]IPR022151Sox developmental protein N-terminalDomain
C [auth D]IPR009071High mobility group box domainDomain