4RWS
Crystal structure of CXCR4 and viral chemokine antagonist vMIP-II complex (PSI Community Target)
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- IMGT Antibody Annotation
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Pharos: Disease Associations
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
- Membrane Protein Annotation: mpstruc
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth C] | d4rwsc_ | Alpha and beta proteins (a+b) | IL8-like | Interleukin 8-like chemokines | Interleukin 8-like chemokines | automated matches | HHV-8 (Human herpesvirus 8 strain GK18 ) [TaxId: 868565 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Class A (rhodopsin) G protein-coupled receptor-like | 8091229 | 4001858 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | G protein-coupled receptor-like | 8091230 | 3000473 | SCOP2 (2022-06-29) |
A | SCOP2B Superfamily | Lysozyme-like | 8033861 | 3001879 | SCOP2B (2022-06-29) |
B [auth C] | SCOP2B Superfamily | Interleukin 8-like chemokines | 8040942 | 3001955 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | 7tm_1_1 | e4rwsA1 | A: alpha bundles | X: Family A G protein-coupled receptor-like (From Topology) | H: Family A G protein-coupled receptor-like (From Topology) | T: Family A G protein-coupled receptor-like | F: 7tm_1_1 | ECOD (1.6) |
A | Phage_lysozyme_2 | e4rwsA2 | A: a+b complex topology | X: Lysozyme-like (From Homology) | H: Lysozyme-like | T: Lysozyme-like | F: Phage_lysozyme_2 | ECOD (1.6) |
B [auth C] | IL8 | e4rwsC1 | A: beta barrels | X: IL8-related (From Homology) | H: IL8-related | T: IL8 | F: IL8 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B [auth C] | 2.40.50.40 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
C-X-C chemokine receptor type 4/Endolysin chimeric protein | CXCR4 | Homo sapiens (human) | CXCR4*01 | R-LIKE-DOMAIN CXCR4 (Pr1-228), R-LIKE-DOMAIN CXCR4 (Pr231-319) | RPI | (CXCR4-LYZOZYME-CXCR4) | IMGT (202436-0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00959 | Phage lysozyme (Phage_lysozyme) | Phage lysozyme | This family includes lambda phage lysozyme and E. coli endolysin. | Domain | |
PF00001 | 7 transmembrane receptor (rhodopsin family) (7tm_1) | 7 transmembrane receptor (rhodopsin family) | - | Family | |
B [auth C] | PF00048 | Small cytokines (intecrine/chemokine), interleukin-8 like (IL8) | Small cytokines (intecrine/chemokine), interleukin-8 like | Includes a number of secreted growth factors and interferons involved in mitogenic, chemotactic, and inflammatory activity. Structure contains two highly conserved disulfide bonds. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR000355 | Chemokine receptor family | Family | |
IPR022726 | CXC chemokine receptor 4 N-terminal domain | Domain | |
IPR000276 | G protein-coupled receptor, rhodopsin-like | Family | |
IPR050119 | G-protein coupled receptor 1 | Family | |
IPR017452 | GPCR, rhodopsin-like, 7TM | Domain | |
IPR001277 | CXC chemokine receptor 4/atypical chemokine receptor 2 | Family | |
IPR052619 | Bacteriophage lysozyme-like | Family | |
IPR001165 | T4-type lysozyme | Family | |
IPR034690 | Endolysin T4 type | Family | |
IPR002196 | Glycoside hydrolase, family 24 | Family | |
IPR023347 | Lysozyme domain superfamily | Homologous Superfamily | |
IPR023346 | Lysozyme-like domain superfamily | Homologous Superfamily | |
B [auth C] | IPR001811 | Chemokine interleukin-8-like domain | Domain |
B [auth C] | IPR039809 | Chemokine beta/gamma/delta | Family |
B [auth C] | IPR036048 | Chemokine interleukin-8-like superfamily | Homologous Superfamily |
B [auth C] | IPR000827 | CC chemokine, conserved site | Conserved Site |
Pharos: Disease Associations Pharos Homepage Annotation
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | Rhodopsin-like receptors and pumps | G-protein coupled receptors, family A |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Chains | External Link | Comment |
---|---|---|
MemProtMD | Annotated as membrane protein by MemProtMD |