4RCN
Structure and function of a single-chain, multi-domain long-chain acyl-coa carboxylase
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | ATP-grasp | e4rcnA2 | A: a+b complex topology | X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology) | H: Protein kinase/SAICAR synthase/ATP-grasp | T: ATP-grasp | F: ATP-grasp | ECOD (1.6) |
A | Biotin_carb_C | e4rcnA3 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: CO dehydrogenase molybdoprotein N-domain-like | F: Biotin_carb_C | ECOD (1.6) |
A | Biotin_lipoyl | e4rcnA4 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: Biotin_lipoyl | ECOD (1.6) |
A | Biotin_carb_N | e4rcnA1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: PreATP-grasp domain | F: Biotin_carb_N | ECOD (1.6) |
A | Carboxyl_trans_C | e4rcnA6 | A: a/b three-layered sandwiches | X: ClpP/crotonase (From Topology) | H: ClpP/crotonase (From Topology) | T: ClpP/crotonase | F: Carboxyl_trans_C | ECOD (1.6) |
B | ATP-grasp | e4rcnB1 | A: a+b complex topology | X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology) | H: Protein kinase/SAICAR synthase/ATP-grasp | T: ATP-grasp | F: ATP-grasp | ECOD (1.6) |
B | Biotin_carb_C | e4rcnB5 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: CO dehydrogenase molybdoprotein N-domain-like | F: Biotin_carb_C | ECOD (1.6) |
B | Biotin_lipoyl | e4rcnB6 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: Biotin_lipoyl | ECOD (1.6) |
B | Biotin_carb_N | e4rcnB3 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: PreATP-grasp domain | F: Biotin_carb_N | ECOD (1.6) |
B | Carboxyl_trans_C | e4rcnB2 | A: a/b three-layered sandwiches | X: ClpP/crotonase (From Topology) | H: ClpP/crotonase (From Topology) | T: ClpP/crotonase | F: Carboxyl_trans_C | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.470.20 | Alpha Beta | 2-Layer Sandwich | D-amino Acid Aminotransferase | Chain A, domain 1 | CATH (4.3.0) |
A | 2.40.50.100 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | CATH (4.3.0) |
A | 3.90.226.10 | Alpha Beta | Alpha-Beta Complex | 2-enoyl-CoA Hydratase | Chain A, domain 1 | CATH (4.3.0) |
B | 3.30.470.20 | Alpha Beta | 2-Layer Sandwich | D-amino Acid Aminotransferase | Chain A, domain 1 | CATH (4.3.0) |
B | 2.40.50.100 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | CATH (4.3.0) |
B | 3.90.226.10 | Alpha Beta | Alpha-Beta Complex | 2-enoyl-CoA Hydratase | Chain A, domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00364 | Biotin-requiring enzyme (Biotin_lipoyl) | Biotin-requiring enzyme | This family covers two Prosite entries, the conserved lysine residue binds biotin in one group and lipoic acid in the other. Note that the HMM does not currently recognise the Glycine cleavage system H proteins. | Domain | |
PF02786 | Carbamoyl-phosphate synthase L chain, ATP binding domain (CPSase_L_D2) | Carbamoyl-phosphate synthase L chain, ATP binding domain | Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines [2]. The c ... | Domain | |
PF00289 | Biotin carboxylase, N-terminal domain (Biotin_carb_N) | Biotin carboxylase, N-terminal domain | This domain is structurally related to the PreATP-grasp domain. The family contains the N-terminus of biotin carboxylase enzymes [1,3], and propionyl-CoA carboxylase A chain [2]. | Domain | |
PF02785 | Biotin carboxylase C-terminal domain (Biotin_carb_C) | Biotin carboxylase C-terminal domain | Biotin carboxylase is a component of the acetyl-CoA carboxylase multi-component enzyme which catalyses the first committed step in fatty acid synthesis in animals, plants and bacteria. Most of the active site residues reported in reference [1] are i ... | Domain | |
PF01039 | Carboxyl transferase domain (Carboxyl_trans) | Carboxyl transferase domain | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR005481 | Biotin carboxylase-like, N-terminal domain | Domain | |
IPR011763 | Acetyl-coenzyme A carboxyltransferase, C-terminal | Domain | |
IPR011761 | ATP-grasp fold | Domain | |
IPR029045 | ClpP/crotonase-like domain superfamily | Homologous Superfamily | |
IPR011762 | Acetyl-coenzyme A carboxyltransferase, N-terminal | Domain | |
IPR011764 | Biotin carboxylation domain | Domain | |
IPR051602 | Acetyl-CoA Carboxylase Biotin Carboxylase Component | Family | |
IPR013815 | ATP-grasp fold, subdomain 1 | Homologous Superfamily | |
IPR034733 | Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta | Domain | |
IPR005482 | Biotin carboxylase, C-terminal | Domain | |
IPR005479 | Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain | Domain | |
IPR016185 | Pre-ATP-grasp domain superfamily | Homologous Superfamily | |
IPR011054 | Rudiment single hybrid motif | Homologous Superfamily | |
IPR011053 | Single hybrid motif | Homologous Superfamily | |
IPR000089 | Biotin/lipoyl attachment | Domain |