4R5O

Crystal structure of a Quinonprotein alcohol dehydrogenase-like protein (BT1487) from Bacteroides thetaiotaomicron VPI-5482 at 2.64 A resolution

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	PKD domain	8093016	3002045	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	YVTN repeat-like/Quinoprotein amine dehydrogenase	8093017	3001671	SCOP2B (2022-06-29)
B	SCOP2 Family	BT1487 N-terminal domain-like	8046192	4004944	SCOP2 (2022-06-29)
B	SCOP2 Family	BT1487 C-terminal domain-like	8046193	4004945	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	PKD domain	8093016	3002045	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	YVTN repeat-like/Quinoprotein amine dehydrogenase	8093017	3001671	SCOP2 (2022-06-29)
C	SCOP2B Superfamily	YVTN repeat-like/Quinoprotein amine dehydrogenase	8093017	3001671	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	PKD domain	8093016	3002045	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	PKD domain	8093016	3002045	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	YVTN repeat-like/Quinoprotein amine dehydrogenase	8093017	3001671	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PKD_1	e4r5oA2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PKD_1	ECOD (1.6)
A	SGL_1	e4r5oA1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 6-bladed	F: SGL_1	ECOD (1.6)
B	PKD_1	e4r5oB2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PKD_1	ECOD (1.6)
B	SGL_1	e4r5oB1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 6-bladed	F: SGL_1	ECOD (1.6)
C	PKD_1	e4r5oC2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PKD_1	ECOD (1.6)
C	SGL_1	e4r5oC1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 6-bladed	F: SGL_1	ECOD (1.6)
D	PKD_1	e4r5oD2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PKD_1	ECOD (1.6)
D	SGL_1	e4r5oD1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 6-bladed	F: SGL_1	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF16820	PKD-like domain (PKD_3)	PKD-like domain	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Quinonprotein alcohol dehydrogenase-like protein	cation binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR031815	Protein of unknown function DUF5074	Family
A, B, C, D	IPR041696	Bacteroidetes PKD-like domain	Domain
A, B, C, D	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.