4Q86

YcaO with AMP Bound

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	TIGR03549	e4q86A1	A: alpha superhelices	X: Repetitive alpha hairpins	H: Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain (From Topology)	T: Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain	F: TIGR03549	ECOD (1.6)
A	YcaO_2nd	e4q86A4	A: a+b two layers	X: dsRBD-like	H: Heterocyclase TruD C-terminal domain (From Topology)	T: Heterocyclase TruD C-terminal domain	F: YcaO_2nd	ECOD (1.6)
A	EUF08654	e4q86A3	A: a+b two layers	X: dsRBD-like	H: Heterocyclase TruD C-terminal domain (From Topology)	T: Heterocyclase TruD C-terminal domain	F: EUF08654	ECOD (1.6)
B	TIGR03549	e4q86B1	A: alpha superhelices	X: Repetitive alpha hairpins	H: Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain (From Topology)	T: Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain	F: TIGR03549	ECOD (1.6)
B	YcaO_2nd	e4q86B4	A: a+b two layers	X: dsRBD-like	H: Heterocyclase TruD C-terminal domain (From Topology)	T: Heterocyclase TruD C-terminal domain	F: YcaO_2nd	ECOD (1.6)
B	EUF08654	e4q86B3	A: a+b two layers	X: dsRBD-like	H: Heterocyclase TruD C-terminal domain (From Topology)	T: Heterocyclase TruD C-terminal domain	F: EUF08654	ECOD (1.6)
C	TIGR03549	e4q86C1	A: alpha superhelices	X: Repetitive alpha hairpins	H: Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain (From Topology)	T: Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain	F: TIGR03549	ECOD (1.6)
C	YcaO_2nd	e4q86C4	A: a+b two layers	X: dsRBD-like	H: Heterocyclase TruD C-terminal domain (From Topology)	T: Heterocyclase TruD C-terminal domain	F: YcaO_2nd	ECOD (1.6)
C	EUF08654	e4q86C3	A: a+b two layers	X: dsRBD-like	H: Heterocyclase TruD C-terminal domain (From Topology)	T: Heterocyclase TruD C-terminal domain	F: EUF08654	ECOD (1.6)
D	TIGR03549	e4q86D1	A: alpha superhelices	X: Repetitive alpha hairpins	H: Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain (From Topology)	T: Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain	F: TIGR03549	ECOD (1.6)
D	YcaO_2nd	e4q86D4	A: a+b two layers	X: dsRBD-like	H: Heterocyclase TruD C-terminal domain (From Topology)	T: Heterocyclase TruD C-terminal domain	F: YcaO_2nd	ECOD (1.6)
D	EUF08654	e4q86D3	A: a+b two layers	X: dsRBD-like	H: Heterocyclase TruD C-terminal domain (From Topology)	T: Heterocyclase TruD C-terminal domain	F: EUF08654	ECOD (1.6)
E	TIGR03549	e4q86E1	A: alpha superhelices	X: Repetitive alpha hairpins	H: Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain (From Topology)	T: Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain	F: TIGR03549	ECOD (1.6)
E	YcaO_2nd	e4q86E4	A: a+b two layers	X: dsRBD-like	H: Heterocyclase TruD C-terminal domain (From Topology)	T: Heterocyclase TruD C-terminal domain	F: YcaO_2nd	ECOD (1.6)
E	EUF08654	e4q86E3	A: a+b two layers	X: dsRBD-like	H: Heterocyclase TruD C-terminal domain (From Topology)	T: Heterocyclase TruD C-terminal domain	F: EUF08654	ECOD (1.6)
F	TIGR03549	e4q86F1	A: alpha superhelices	X: Repetitive alpha hairpins	H: Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain (From Topology)	T: Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain	F: TIGR03549	ECOD (1.6)
F	YcaO_2nd	e4q86F4	A: a+b two layers	X: dsRBD-like	H: Heterocyclase TruD C-terminal domain (From Topology)	T: Heterocyclase TruD C-terminal domain	F: YcaO_2nd	ECOD (1.6)
F	EUF08654	e4q86F3	A: a+b two layers	X: dsRBD-like	H: Heterocyclase TruD C-terminal domain (From Topology)	T: Heterocyclase TruD C-terminal domain	F: EUF08654	ECOD (1.6)
G	TIGR03549	e4q86G1	A: alpha superhelices	X: Repetitive alpha hairpins	H: Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain (From Topology)	T: Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain	F: TIGR03549	ECOD (1.6)
G	YcaO_2nd	e4q86G4	A: a+b two layers	X: dsRBD-like	H: Heterocyclase TruD C-terminal domain (From Topology)	T: Heterocyclase TruD C-terminal domain	F: YcaO_2nd	ECOD (1.6)
G	EUF08654	e4q86G3	A: a+b two layers	X: dsRBD-like	H: Heterocyclase TruD C-terminal domain (From Topology)	T: Heterocyclase TruD C-terminal domain	F: EUF08654	ECOD (1.6)
H	TIGR03549	e4q86H1	A: alpha superhelices	X: Repetitive alpha hairpins	H: Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain (From Topology)	T: Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain	F: TIGR03549	ECOD (1.6)
H	YcaO_2nd	e4q86H4	A: a+b two layers	X: dsRBD-like	H: Heterocyclase TruD C-terminal domain (From Topology)	T: Heterocyclase TruD C-terminal domain	F: YcaO_2nd	ECOD (1.6)
H	EUF08654	e4q86H3	A: a+b two layers	X: dsRBD-like	H: Heterocyclase TruD C-terminal domain (From Topology)	T: Heterocyclase TruD C-terminal domain	F: EUF08654	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF02624	YcaO cyclodehydratase, ATP-ad Mg2+-binding (YcaO)	YcaO cyclodehydratase, ATP-ad Mg2+-binding	-	Family
A, B, C, D, E A, B, C, D, E, F, G, H	PF18381	YcaO cyclodehydratase C-terminal domain (YcaO_C)	YcaO cyclodehydratase C-terminal domain	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Ribosomal protein S12 methylthiotransferase accessory factor YcaO	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding pyrophosphatase activity nucleoside triphosphate diphosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity ATP diphosphatase activity hydrolase activity, acting on acid anhydrides catalytic activity	-	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR003776	YcaO-like domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR041080	YcaO cyclodehydratase, C-terminal	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR052903	Ribosomal protein S12 methylthiotransferase accessory	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.

Prepare Data

Validate Data

Deposit Data

Help and Resources

4Q86

YcaO with AMP Bound

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage