4PFU
Crystal structure of mannobiose bound oligopeptide ABC transporter, periplasmic oligopeptide-binding protein (TM1226) from THERMOTOGA MARITIMA at 2.05 A resolution
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | d4pfub1 | Alpha and beta proteins (a/b) | Periplasmic binding protein-like II | Periplasmic binding protein-like II | Phosphate binding protein-like | automated matches | (Thermotoga maritima MSB8 ) [TaxId: 243274 ], | SCOPe (2.08) |
B | d4pfub2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | (Thermotoga maritima MSB8 ) [TaxId: 243274 ], | SCOPe (2.08) |
A | d4pfua_ | Alpha and beta proteins (a/b) | Periplasmic binding protein-like II | Periplasmic binding protein-like II | Phosphate binding protein-like | automated matches | (Thermotoga maritima MSB8 ) [TaxId: 243274 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2 Family | Phosphate binding protein-like | 8089495 | 4000229 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | Type 2 solute binding protein-like | 8089496 | 3000083 | SCOP2 (2022-06-29) |
A | SCOP2B Superfamily | Type 2 solute binding protein-like | 8089496 | 3000083 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | PF00496 | e4pfuB2 | A: a+b two layers | X: Alpha-beta plaits | H: Oligo-peptide binding protein (OPPA) insertion domain (From Topology) | T: Oligo-peptide binding protein (OPPA) insertion domain | F: PF00496 | ECOD (1.6) |
B | PF00496 | e4pfuB3 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: PF00496 | ECOD (1.6) |
A | PF00496 | e4pfuA2 | A: a+b two layers | X: Alpha-beta plaits | H: Oligo-peptide binding protein (OPPA) insertion domain (From Topology) | T: Oligo-peptide binding protein (OPPA) insertion domain | F: PF00496 | ECOD (1.6) |
A | PF00496 | e4pfuA3 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: PF00496 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 3.40.190.10 | Alpha Beta | 3-Layer(aba) Sandwich | D-Maltodextrin-Binding Protein | domain 2 | CATH (4.3.0) |
B | 3.90.76.10 | Alpha Beta | Alpha-Beta Complex | Dipeptide-binding Protein | domain 1 | CATH (4.3.0) |
B | 3.10.105.10 | Alpha Beta | Roll | Dipeptide-binding Protein | domain 3 | CATH (4.3.0) |
A | 3.40.190.10 | Alpha Beta | 3-Layer(aba) Sandwich | D-Maltodextrin-Binding Protein | domain 2 | CATH (4.3.0) |
A | 3.90.76.10 | Alpha Beta | Alpha-Beta Complex | Dipeptide-binding Protein | domain 1 | CATH (4.3.0) |
A | 3.10.105.10 | Alpha Beta | Roll | Dipeptide-binding Protein | domain 3 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00496 | Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5) | Bacterial extracellular solute-binding proteins, family 5 Middle | The borders of this family are based on the PDBSum definitions of the domain edges for Swiss:P06202. | Domain |