Structural Basis for the Recognition of Human Cytomegalovirus Glycoprotein B by the Neutralizing Human Antibody SM5-1
External Resource: Annotation
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
A | Glycoprot_B_PH2 | e4ot1A1 | A: beta barrels | X: PH domain-like | H: second barrel domain in viral glycoproteins (From Topology) | T: second barrel domain in viral glycoproteins | F: Glycoprot_B_PH2 | ECOD (1.6) |
B [auth H] | V-set_8 | e4ot1H2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
B [auth H] | C1-set_1 | e4ot1H1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
C [auth L] | C1-set | e4ot1L2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set | ECOD (1.6) |
C [auth L] | V-set_3 | e4ot1L1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_3 | ECOD (1.6) |
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
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B [auth H] | SM5-1 Fab | VH-CH1 | Homo sapiens (human) | IGHV1-2*02, IGHJ6*01, IGHJ6*02, IGHG1*01, IGHG1*02, IGHG1*04 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-1_LAMBDA | IMGT (202436-0) |
C [auth L] | SM5-1 Fab | L-LAMBDA | Homo sapiens (human) | IGLV1-51*01, IGLJ2*01, IGLJ3*01, IGLC2*01, IGLC2*02, IGLC3*04 | V-DOMAIN V-LAMBDA, C-DOMAIN C-LAMBDA | IG | FAB-GAMMA-1_LAMBDA | IMGT (202436-0) |
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
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B [auth H] | Heavy Chain | IGHV1 | - | envelope glycoprotein b | SAbDab (2024-09-13) |
C [auth L] | Light Chain | IGLV1 | Lambda | envelope glycoprotein b | SAbDab (2024-09-13) |
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
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| Envelope glycoprotein B | - | | |
B [auth H] | SM5-1 Fab Heavy Chain | - | - | - |
C [auth L] | SM5-1 Fab Light Chain | - | - | - |