4N0O
Complex structure of Arterivirus nonstructural protein 10 (helicase) with DNA
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | EUF07525 | e4n0oA1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: EUF07525 | ECOD (1.6) |
A | DEAD_4 | e4n0oA2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: DEAD_4 | ECOD (1.6) |
A | UvrD_C_2_1 | e4n0oA3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: UvrD_C_2_1 | ECOD (1.6) |
A | CarbpepA_inh_like | e4n0oA4 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: CarbpepA_inh_like | ECOD (1.6) |
B [auth C] | EUF07525 | e4n0oC1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: EUF07525 | ECOD (1.6) |
B [auth C] | DEAD_4 | e4n0oC2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: DEAD_4 | ECOD (1.6) |
B [auth C] | UvrD_C_2_1 | e4n0oC3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: UvrD_C_2_1 | ECOD (1.6) |
B [auth C] | CarbpepA_inh_like | e4n0oC4 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: CarbpepA_inh_like | ECOD (1.6) |
C [auth E] | EUF07525 | e4n0oE1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: EUF07525 | ECOD (1.6) |
C [auth E] | DEAD_4 | e4n0oE2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: DEAD_4 | ECOD (1.6) |
C [auth E] | UvrD_C_2_1 | e4n0oE3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: UvrD_C_2_1 | ECOD (1.6) |
C [auth E] | CarbpepA_inh_like | e4n0oE4 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: CarbpepA_inh_like | ECOD (1.6) |
D [auth G] | EUF07525 | e4n0oG1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: EUF07525 | ECOD (1.6) |
D [auth G] | DEAD_4 | e4n0oG2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: DEAD_4 | ECOD (1.6) |
D [auth G] | UvrD_C_2_1 | e4n0oG3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: UvrD_C_2_1 | ECOD (1.6) |
D [auth G] | CarbpepA_inh_like | e4n0oG4 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: CarbpepA_inh_like | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, B [auth C], C [auth E], D [auth G] | PF17873 | Replicase polyprotein 1ab (Rep_1B) | Replicase polyprotein 1ab | This entry relates to a regulatory domain found in replicase polyprotein 1ab found in Arterivirus. Structural studies of arterivirus helicase (nsp10), indicate that this domain undergoes conformational changes on substrate binding. Besides the large ... | Domain |
A, B [auth C], C [auth E], D [auth G] | PF01443 | Viral (Superfamily 1) RNA helicase (Viral_helicase1) | Viral (Superfamily 1) RNA helicase | - | Family |
A, B [auth C], C [auth E], D [auth G] | PF17977 | RING/Ubox like zinc-binding domain (zf-RING_13) | RING/Ubox like zinc-binding domain | This is a zinc binding domain found in nidovirus helicase. It includes includes 12 or 13 conserved Cys/His residues. Amino acid substitutions in ZBD or the adjacent spacer that connects it to the downstream domain can profoundly affect EAV (equine ar ... | Domain |