4LLO
Structure of the eag domain-CNBHD complex of the mouse EAG1 channel
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | d4llob_ | Alpha and beta proteins (a+b) | Profilin-like | PYP-like sensor domain (PAS domain) | automated matches | automated matches | mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
D | d4llod_ | Alpha and beta proteins (a+b) | Profilin-like | PYP-like sensor domain (PAS domain) | automated matches | automated matches | mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
F | d4llof_ | Alpha and beta proteins (a+b) | Profilin-like | PYP-like sensor domain (PAS domain) | automated matches | automated matches | mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
H | d4lloh_ | Alpha and beta proteins (a+b) | Profilin-like | PYP-like sensor domain (PAS domain) | automated matches | automated matches | mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | PYP-like sensor domain (PAS domain) | 8084678 | 3000471 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | PYP-like sensor domain (PAS domain) | 8084678 | 3000471 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | PYP-like sensor domain (PAS domain) | 8084678 | 3000471 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | PYP-like sensor domain (PAS domain) | 8084678 | 3000471 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00027 | e4lloA1 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: PF00027 | ECOD (1.6) |
C | PF00027 | e4lloC1 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: PF00027 | ECOD (1.6) |
E | PF00027 | e4lloE1 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: PF00027 | ECOD (1.6) |
G | PF00027 | e4lloG1 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: PF00027 | ECOD (1.6) |
B | PF13426 | e4lloB1 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: PF13426 | ECOD (1.6) |
D | PF13426 | e4lloD1 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: PF13426 | ECOD (1.6) |
F | PF13426 | e4lloF1 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: PF13426 | ECOD (1.6) |
H | PF13426 | e4lloH1 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: PF13426 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.120.10 | Mainly Beta | Sandwich | Jelly Rolls | Jelly Rolls | CATH (4.3.0) |
C | 2.60.120.10 | Mainly Beta | Sandwich | Jelly Rolls | Jelly Rolls | CATH (4.3.0) |
E | 2.60.120.10 | Mainly Beta | Sandwich | Jelly Rolls | Jelly Rolls | CATH (4.3.0) |
G | 2.60.120.10 | Mainly Beta | Sandwich | Jelly Rolls | Jelly Rolls | CATH (4.3.0) |
B | 3.30.450.20 | Alpha Beta | 2-Layer Sandwich | Beta-Lactamase | PAS domain | CATH (4.3.0) |
D | 3.30.450.20 | Alpha Beta | 2-Layer Sandwich | Beta-Lactamase | PAS domain | CATH (4.3.0) |
F | 3.30.450.20 | Alpha Beta | 2-Layer Sandwich | Beta-Lactamase | PAS domain | CATH (4.3.0) |
H | 3.30.450.20 | Alpha Beta | 2-Layer Sandwich | Beta-Lactamase | PAS domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00027 | Cyclic nucleotide-binding domain (cNMP_binding) | Cyclic nucleotide-binding domain | This domain sensor domain can bind cAMP, cGMP, c-di-GMP, oxygen and 2-oxoglutarate (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043). | Domain | |
PF13426 | PAS domain (PAS_9) | PAS domain | This domain is found in many signalling proteins in which it functions as a sensor domain. It recognises FMN, Zn(II), FAD and riboflavin (MAtilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043). | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR003949 | Potassium channel, voltage-dependent, EAG | Family | |
IPR014710 | RmlC-like jelly roll fold | Homologous Superfamily | |
IPR000700 | PAS-associated, C-terminal | Domain | |
IPR005821 | Ion transport domain | Domain | |
IPR003938 | Potassium channel, voltage-dependent, EAG/ELK/ERG | Family | |
IPR000014 | PAS domain | Domain | |
IPR000595 | Cyclic nucleotide-binding domain | Domain | |
IPR035965 | PAS domain superfamily | Homologous Superfamily | |
IPR001610 | PAC motif | Repeat | |
IPR018490 | Cyclic nucleotide-binding domain superfamily | Homologous Superfamily | |
IPR003949 | Potassium channel, voltage-dependent, EAG | Family | |
IPR014710 | RmlC-like jelly roll fold | Homologous Superfamily | |
IPR000700 | PAS-associated, C-terminal | Domain | |
IPR005821 | Ion transport domain | Domain | |
IPR003938 | Potassium channel, voltage-dependent, EAG/ELK/ERG | Family | |
IPR000014 | PAS domain | Domain | |
IPR000595 | Cyclic nucleotide-binding domain | Domain | |
IPR035965 | PAS domain superfamily | Homologous Superfamily | |
IPR001610 | PAC motif | Repeat | |
IPR018490 | Cyclic nucleotide-binding domain superfamily | Homologous Superfamily |