4LCD
Structure of an Rsp5xUbxSna3 complex: Mechanism of ubiquitin ligation and lysine prioritization by a HECT E3
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Hect, E3 ligase catalytic domain | 8084361 | 3000934 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Hect, E3 ligase catalytic domain | 8084361 | 3000934 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Ubiquitin-like | 8043829 | 3000157 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Ubiquitin-like | 8043829 | 3000157 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | WW | e4lcdA1 | A: beta meanders | X: WW domain-like | H: WW domain (From Topology) | T: WW domain | F: WW | ECOD (1.6) |
A | HECT | e4lcdA2 | A: a+b complex topology | X: Hect, E3 ligase catalytic domain (From Topology) | H: Hect, E3 ligase catalytic domain (From Topology) | T: Hect, E3 ligase catalytic domain | F: HECT | ECOD (1.6) |
B | WW | e4lcdB1 | A: beta meanders | X: WW domain-like | H: WW domain (From Topology) | T: WW domain | F: WW | ECOD (1.6) |
B | HECT | e4lcdB2 | A: a+b complex topology | X: Hect, E3 ligase catalytic domain (From Topology) | H: Hect, E3 ligase catalytic domain (From Topology) | T: Hect, E3 ligase catalytic domain | F: HECT | ECOD (1.6) |
E | ubiquitin_1 | e4lcdE1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ubiquitin_1 | ECOD (1.6) |
F | ubiquitin_1 | e4lcdF1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ubiquitin_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00397 | WW domain (WW) | WW domain | The WW domain is a protein module with two highly conserved tryptophans that binds proline-rich peptide motifs in vitro. | Domain | |
PF00632 | HECT-domain (ubiquitin-transferase) (HECT) | HECT-domain (ubiquitin-transferase) | The name HECT comes from Homologous to the E6-AP Carboxyl Terminus. | Domain | |
PF00240 | Ubiquitin family (ubiquitin) | Ubiquitin family | This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR035983 | HECT, E3 ligase catalytic domain | Homologous Superfamily | |
IPR036020 | WW domain superfamily | Homologous Superfamily | |
IPR050409 | E3 ubiquitin-protein ligase | Family | |
IPR000008 | C2 domain | Domain | |
IPR000569 | HECT domain | Domain | |
IPR024928 | E3 ubiquitin-protein ligase, SMURF1 type | Family | |
IPR035892 | C2 domain superfamily | Homologous Superfamily | |
IPR001202 | WW domain | Domain | |
IPR000612 | Proteolipid membrane potential modulator | Family | |
IPR019954 | Ubiquitin conserved site | Conserved Site | |
IPR000626 | Ubiquitin-like domain | Domain | |
IPR019956 | Ubiquitin domain | Domain | |
IPR050158 | Ubiquitin and ubiquitin-like | Family | |
IPR029071 | Ubiquitin-like domain superfamily | Homologous Superfamily |