4IZK
Crystal structure of yellowtail ascites virus VP4 protease active site mutant (K674A) reveals both an acyl-enzyme complex and an empty active site
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Birnavirus VP4 protease-like | 8049478 | 4006521 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Ribosomal protein S5 domain 2-like | 8053556 | 3000100 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8053556 | 3000100 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Birna_VP4_1st | e4izkA3 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: Birna_VP4_1st | ECOD (1.6) |
A | Birna_VP4_2nd | e4izkA2 | A: a/b three-layered sandwiches | X: C-terminal subdomain in Lon-related proteases catalytic domains (From Topology) | H: C-terminal subdomain in Lon-related proteases catalytic domains (From Topology) | T: C-terminal subdomain in Lon-related proteases catalytic domains | F: Birna_VP4_2nd | ECOD (1.6) |
B | Birna_VP4_1st | e4izkB3 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: Birna_VP4_1st | ECOD (1.6) |
B | Birna_VP4_2nd | e4izkB2 | A: a/b three-layered sandwiches | X: C-terminal subdomain in Lon-related proteases catalytic domains (From Topology) | H: C-terminal subdomain in Lon-related proteases catalytic domains (From Topology) | T: C-terminal subdomain in Lon-related proteases catalytic domains | F: Birna_VP4_2nd | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.230.110 | Alpha Beta | 2-Layer Sandwich | Ribosomal Protein S5 | domain 2 | CATH (4.3.0) |
B | 3.30.230.110 | Alpha Beta | 2-Layer Sandwich | Ribosomal Protein S5 | domain 2 | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Yellowtail Ascites Virus (YAV) VP4 protease | ||||
Yellowtail Ascites Virus (YAV) VP4 protease |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR029053 | Viral coat protein subunit | Homologous Superfamily | |
IPR043048 | Birnavirus VP3, domain 1 | Homologous Superfamily | |
IPR025775 | Birnavirus VP4 protease domain | Domain | |
IPR043049 | Birnavirus VP3, domain 2 | Homologous Superfamily | |
IPR002662 | Birnavirus VP2 protein | Family | |
IPR002663 | Birnavirus VP3 protein | Family | |
IPR029053 | Viral coat protein subunit | Homologous Superfamily | |
IPR043048 | Birnavirus VP3, domain 1 | Homologous Superfamily | |
IPR025775 | Birnavirus VP4 protease domain | Domain | |
IPR043049 | Birnavirus VP3, domain 2 | Homologous Superfamily | |
IPR002662 | Birnavirus VP2 protein | Family | |
IPR002663 | Birnavirus VP3 protein | Family |