4IQZ
The crystal structure of a large insert in RNA polymerase (RpoC) subunit from E. coli
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PRK14844 | e4iqzA1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: PRK14844 | ECOD (1.6) |
A | RNA_pol_Rpb1_5_1st | e4iqzA2 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: RNA_pol_Rpb1_5_1st | ECOD (1.6) |
B | PRK14844 | e4iqzB3 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: PRK14844 | ECOD (1.6) |
B | RNA_pol_Rpb1_5_1st | e4iqzB2 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: RNA_pol_Rpb1_5_1st | ECOD (1.6) |
C | PRK14844 | e4iqzC3 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: PRK14844 | ECOD (1.6) |
C | RNA_pol_Rpb1_5_1st | e4iqzC2 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: RNA_pol_Rpb1_5_1st | ECOD (1.6) |
D | PRK14844 | e4iqzD1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: PRK14844 | ECOD (1.6) |
D | RNA_pol_Rpb1_5_1st | e4iqzD2 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: RNA_pol_Rpb1_5_1st | ECOD (1.6) |
E | PRK14844 | e4iqzE3 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: PRK14844 | ECOD (1.6) |
E | RNA_pol_Rpb1_5_1st | e4iqzE2 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: RNA_pol_Rpb1_5_1st | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.40.50.100 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | CATH (4.3.0) |
B | 2.40.50.100 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | CATH (4.3.0) |
C | 2.40.50.100 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | CATH (4.3.0) |
D | 2.40.50.100 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | CATH (4.3.0) |
E | 2.40.50.100 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR007081 | RNA polymerase Rpb1, domain 5 | Domain | |
IPR045867 | DNA-directed RNA polymerase, subunit beta-prime | Family | |
IPR007083 | RNA polymerase Rpb1, domain 4 | Domain | |
IPR044893 | RNA polymerase Rpb1, clamp domain superfamily | Homologous Superfamily | |
IPR006592 | RNA polymerase, N-terminal | Domain | |
IPR007066 | RNA polymerase Rpb1, domain 3 | Domain | |
IPR012754 | DNA-directed RNA polymerase, subunit beta-prime, bacterial type | Family | |
IPR042102 | RNA polymerase Rpb1, domain 3 superfamily | Homologous Superfamily | |
IPR000722 | RNA polymerase, alpha subunit | Domain | |
IPR038120 | RNA polymerase Rpb1, funnel domain superfamily | Homologous Superfamily | |
IPR007080 | RNA polymerase Rpb1, domain 1 | Domain |