4IQR
Multi-Domain Organization of the HNF4alpha Nuclear Receptor Complex on DNA
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
E | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8068350 | 3000068 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Nuclear receptor ligand-binding domain | 8038367 | 3001442 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Nuclear receptor ligand-binding domain | 8038367 | 3001442 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8068350 | 3000068 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Nuclear receptor ligand-binding domain | 8038367 | 3001442 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8068350 | 3000068 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Nuclear receptor ligand-binding domain | 8038367 | 3001442 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8068350 | 3000068 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
E | Hormone_recep | e4iqrE1 | A: alpha arrays | X: Nuclear receptor ligand-binding domain (From Topology) | H: Nuclear receptor ligand-binding domain (From Topology) | T: Nuclear receptor ligand-binding domain | F: Hormone_recep | ECOD (1.6) |
E | zf-C4 | e4iqrE2 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: zf-C4 | ECOD (1.6) |
A | Hormone_recep | e4iqrA5 | A: alpha arrays | X: Nuclear receptor ligand-binding domain (From Topology) | H: Nuclear receptor ligand-binding domain (From Topology) | T: Nuclear receptor ligand-binding domain | F: Hormone_recep | ECOD (1.6) |
A | zf-C4 | e4iqrA6 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: zf-C4 | ECOD (1.6) |
B | Hormone_recep | e4iqrB3 | A: alpha arrays | X: Nuclear receptor ligand-binding domain (From Topology) | H: Nuclear receptor ligand-binding domain (From Topology) | T: Nuclear receptor ligand-binding domain | F: Hormone_recep | ECOD (1.6) |
B | zf-C4 | e4iqrB4 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: zf-C4 | ECOD (1.6) |
F | Hormone_recep | e4iqrF1 | A: alpha arrays | X: Nuclear receptor ligand-binding domain (From Topology) | H: Nuclear receptor ligand-binding domain (From Topology) | T: Nuclear receptor ligand-binding domain | F: Hormone_recep | ECOD (1.6) |
F | zf-C4 | e4iqrF2 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: zf-C4 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
E | 3.30.50.10 | Alpha Beta | 2-Layer Sandwich | Erythroid Transcription Factor GATA-1 | Chain A | CATH (4.3.0) |
E | 1.10.565.10 | Mainly Alpha | Orthogonal Bundle | Retinoid X Receptor | Retinoid X Receptor | CATH (4.3.0) |
A | 3.30.50.10 | Alpha Beta | 2-Layer Sandwich | Erythroid Transcription Factor GATA-1 | Chain A | CATH (4.3.0) |
A | 1.10.565.10 | Mainly Alpha | Orthogonal Bundle | Retinoid X Receptor | Retinoid X Receptor | CATH (4.3.0) |
B | 3.30.50.10 | Alpha Beta | 2-Layer Sandwich | Erythroid Transcription Factor GATA-1 | Chain A | CATH (4.3.0) |
B | 1.10.565.10 | Mainly Alpha | Orthogonal Bundle | Retinoid X Receptor | Retinoid X Receptor | CATH (4.3.0) |
F | 3.30.50.10 | Alpha Beta | 2-Layer Sandwich | Erythroid Transcription Factor GATA-1 | Chain A | CATH (4.3.0) |
F | 1.10.565.10 | Mainly Alpha | Orthogonal Bundle | Retinoid X Receptor | Retinoid X Receptor | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00105 | Zinc finger, C4 type (two domains) (zf-C4) | Zinc finger, C4 type (two domains) | In nearly all cases, this is the DNA binding domain of a nuclear hormone receptor. The alignment contains two Zinc finger domains that are too dissimilar to be aligned with each other. | Domain | |
PF00104 | Ligand-binding domain of nuclear hormone receptor (Hormone_recep) | Ligand-binding domain of nuclear hormone receptor | This all helical domain is involved in binding the hormone in these receptors. | Domain | |