Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF05638e4hkhA1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: PF05638ECOD (1.6)
C [auth D]PF05638e4hkhD1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: PF05638ECOD (1.6)
D [auth E]PF05638e4hkhE1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: PF05638ECOD (1.6)
E [auth F]PF05638e4hkhF1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: PF05638ECOD (1.6)
F [auth G]PF05638e4hkhG1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: PF05638ECOD (1.6)
BPF05638e4hkhB1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: PF05638ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.30.110.20 Mainly Beta Roll Pnp Oxidase Chain ACATH (4.3.0)
C [auth D]2.30.110.20 Mainly Beta Roll Pnp Oxidase Chain ACATH (4.3.0)
D [auth E]2.30.110.20 Mainly Beta Roll Pnp Oxidase Chain ACATH (4.3.0)
E [auth F]2.30.110.20 Mainly Beta Roll Pnp Oxidase Chain ACATH (4.3.0)
F [auth G]2.30.110.20 Mainly Beta Roll Pnp Oxidase Chain ACATH (4.3.0)
B2.30.110.20 Mainly Beta Roll Pnp Oxidase Chain ACATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF05638Type VI secretion system effector, Hcp (T6SS_HCP)Type VI secretion system effector, HcpHCP is a family of proteins which are expressed in up to 1000 copies in Gram-negative bacteria. Together these copies aggregate into a needle-like shaft or tube that will penetrate other bacteria via a puncturing protein attached to its head [1]. In ...HCP is a family of proteins which are expressed in up to 1000 copies in Gram-negative bacteria. Together these copies aggregate into a needle-like shaft or tube that will penetrate other bacteria via a puncturing protein attached to its head [1]. Initially Hcp forms a hexameric structure with a central channel of 40 Angstroms. These hexamers pile up one on top of each other forming nanotubes resembling the gp19 tail phage tube [2].
Domain