4H3H
Crystal structure of a ternary complex of human symplekin NTD, human Ssu72 and a RNA poymerase II CTD peptide phosphorylated at SER-7
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | ARM repeat-like | 8093027 | 3000116 | SCOP2B (2022-06-29) |
C [auth D] | SCOP2B Superfamily | ARM repeat-like | 8093027 | 3000116 | SCOP2B (2022-06-29) |
D [auth E] | SCOP2B Superfamily | Rhodanese/Cell cycle control phosphatase | 8095913 | 3000320 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Rhodanese/Cell cycle control phosphatase | 8095913 | 3000320 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | DUF3453 | e4h3hA1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: DUF3453 | ECOD (1.6) |
C [auth D] | DUF3453 | e4h3hD2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: DUF3453 | ECOD (1.6) |
D [auth E] | Ssu72 | e4h3hE1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Flavoproteins/Phosphotyrosine protein phosphatases-like | T: Phosphotyrosine protein phosphatases I-like | F: Ssu72 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.25.10.10 | Mainly Alpha | Alpha Horseshoe | Leucine-rich Repeat Variant | Leucine-rich Repeat Variant | CATH (4.3.0) |
C [auth D] | 1.25.10.10 | Mainly Alpha | Alpha Horseshoe | Leucine-rich Repeat Variant | Leucine-rich Repeat Variant | CATH (4.3.0) |
D [auth E] | 3.40.50.2300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Response regulator | CATH (4.3.0) |
D [auth E] | 6.10.140.550 | Special | Helix non-globular | Helix Hairpins | CATH (4.3.0) | |
B | 3.40.50.2300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Response regulator | CATH (4.3.0) |
B | 6.10.140.550 | Special | Helix non-globular | Helix Hairpins | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, C [auth D] | PF11935 | Symplekin/PTA1 N-terminal (SYMPK_PTA1_N) | Symplekin/PTA1 N-terminal | - | Repeat |
B, D [auth E] | PF04722 | Ssu72-like protein (Ssu72) | Ssu72-like protein | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, C [auth D] | IPR022075 | Symplekin C-terminal | Domain |
A, C [auth D] | IPR016024 | Armadillo-type fold | Homologous Superfamily |
A, C [auth D] | IPR021850 | Symplekin/Pta1 | Family |
A, C [auth D] | IPR032460 | Symplekin/Pta1, N-terminal | Domain |
A, C [auth D] | IPR011989 | Armadillo-like helical | Homologous Superfamily |
B, D [auth E] | IPR006811 | RNA polymerase II subunit A | Family |
Pharos: Disease Associations Pharos Homepage Annotation
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
E [auth F] | SEP | Parent Component: SER :  AA0037 :  O-phospho-L-serine MOD:00046 |