4GMJ
Structure of human NOT1 MIF4G domain co-crystallized with CAF1
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | ARM repeat-like | 8053825 | 3000116 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | ARM repeat-like | 8053825 | 3000116 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | ARM repeat-like | 8053825 | 3000116 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Ribonuclease H-like | 8033733 | 3000143 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Ribonuclease H-like | 8033733 | 3000143 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Ribonuclease H-like | 8033733 | 3000143 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | CNOT1_CAF1_bind | e4gmjA1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: CNOT1_CAF1_bind | ECOD (1.6) |
C | CNOT1_CAF1_bind | e4gmjC2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: CNOT1_CAF1_bind | ECOD (1.6) |
E | CNOT1_CAF1_bind | e4gmjE1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: CNOT1_CAF1_bind | ECOD (1.6) |
B | CAF1 | e4gmjB1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: CAF1 | ECOD (1.6) |
D | CAF1 | e4gmjD1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: CAF1 | ECOD (1.6) |
F | CAF1 | e4gmjF1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: CAF1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.25.40.180 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | CATH (4.3.0) | |
C | 1.25.40.180 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | CATH (4.3.0) | |
E | 1.25.40.180 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | CATH (4.3.0) | |
B | 3.30.420.10 | Alpha Beta | 2-Layer Sandwich | Nucleotidyltransferase | domain 5 | CATH (4.3.0) |
D | 3.30.420.10 | Alpha Beta | 2-Layer Sandwich | Nucleotidyltransferase | domain 5 | CATH (4.3.0) |
F | 3.30.420.10 | Alpha Beta | 2-Layer Sandwich | Nucleotidyltransferase | domain 5 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF16415 | CCR4-NOT transcription complex subunit 1 CAF1-binding domain (CNOT1_CAF1_bind) | CCR4-NOT transcription complex subunit 1 CAF1-binding domain | - | Repeat | |
PF04857 | CAF1 family ribonuclease (CAF1) | CAF1 family ribonuclease | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR024557 | CCR4-NOT transcription complex subunit 1, domain 4 | Domain | |
IPR032191 | CCR4-NOT transcription complex subunit 1, CAF1-binding domain | Domain | |
IPR032193 | CCR4-NOT transcription complex subunit 1, TTP binding domain | Domain | |
IPR038535 | CCR4-NOT subunit 1, TTP binding domain superfamily | Homologous Superfamily | |
IPR040398 | CCR4-NOT transcription complex subunit 1 | Family | |
IPR007196 | CCR4-Not complex component, Not1, C-terminal | Domain | |
IPR032194 | CCR4-NOT transcription complex subunit 1, HEAT repeat | Domain | |
IPR036397 | Ribonuclease H superfamily | Homologous Superfamily | |
IPR039637 | CCR4-NOT transcription complex subunit 7/8/Pop2 | Family | |
IPR012337 | Ribonuclease H-like superfamily | Homologous Superfamily | |
IPR006941 | Ribonuclease CAF1 | Family |