Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad4glia_ Alpha and beta proteins (a/b) Periplasmic binding protein-like II Periplasmic binding protein-like II automated matches automated matches bacteria, human (Escherichia coli ) [TaxId: 562 ], bacteria, human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyType 2 solute binding protein-like8058187 3000083 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ASBP_bac_1_Ce4gliA2 A: a/b three-layered sandwichesX: Periplasmic binding protein-like II (From Topology)H: Periplasmic binding protein-like II (From Topology)T: Periplasmic binding protein-like IIF: SBP_bac_1_CECOD (1.6)
ASBP_bac_1_N_1e4gliA1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like II (From Topology)H: Periplasmic binding protein-like II (From Topology)T: Periplasmic binding protein-like IIF: SBP_bac_1_N_1ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.40.190.10 Alpha Beta 3-Layer(aba) Sandwich D-Maltodextrin-Binding Protein domain 2CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF01547Bacterial extracellular solute-binding protein (SBP_bac_1)Bacterial extracellular solute-binding protein- Family
PF20635Survival Motor Neuron, YG-box (SMN_YG-box)Survival Motor Neuron, YG-boxSurvival Motor Neuron (SMN) protein forms the oligomeric core of a multi-protein complex that functions in spliceosomal snRNP biogenesis. Mutations in the SMN gene cause spinal muscular atrophy (SMA). It has three highly conserved domains: a short N- ...Survival Motor Neuron (SMN) protein forms the oligomeric core of a multi-protein complex that functions in spliceosomal snRNP biogenesis. Mutations in the SMN gene cause spinal muscular atrophy (SMA). It has three highly conserved domains: a short N-terminal segment responsible for binding with high affinity to Gemin2, therefore, called Gemin2-binding domain (G2-BD), a central Tudor domain (Pfam:PF06003) that recognises symmetric dimethylarginine (sDMA) modifications in proteins involved in RNA processing, and a C-terminal domain, represented in this entry, referred to as the 'YG-box' [1,2]. This domain contains three overlapping motifs: GxxxGxxxG, YxxxYxxxY and SxxxSxxxSxxxT. The YG-box forms helical oligomers similar to the glycine zippers found in transmembrane channels. The YG-box oligomers are thought to be involved in oligomerization and are likely to be used directly in mediating interactions that are crucial for SMN's functions [1]. It has been reported that nearly half of the known SMA patient missense mutations map to the SMN YG-box [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Maltose-binding periplasmic protein, Survival motor neuron protein chimera