4BZJ
The structure of the COPII coat assembled on membranes
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | ANAPC4_WD40_6 | e4bzjA1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: ANAPC4_WD40_6 | ECOD (1.6) |
A | Sec16_C_1 | e4bzjA2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology) | T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain | F: Sec16_C_1 | ECOD (1.6) |
C | ANAPC4_WD40_6 | e4bzjC2 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: ANAPC4_WD40_6 | ECOD (1.6) |
C | Sec16_C_1 | e4bzjC1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology) | T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain | F: Sec16_C_1 | ECOD (1.6) |
B | ANAPC4_WD40_19 | e4bzjB1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: ANAPC4_WD40_19 | ECOD (1.6) |
D [auth F] | ANAPC4_WD40_19 | e4bzjF1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: ANAPC4_WD40_19 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat | |
PF12931 | Sec23-binding domain of Sec16 (Sec16_C) | Sec23-binding domain of Sec16 | Sec16 is a multi-domain vesicle coat protein. The C-terminal region is the part that binds to Sec23, a COPII vesicle coat protein. This association is part of the transport vesicle coat structure [1]. | Domain | |
PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat | |
D [auth F] | PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR021614 | Protein transport protein SEC31 | Family | |
IPR019775 | WD40 repeat, conserved site | Conserved Site | |
IPR040251 | Protein transport protein SEC31-like | Family | |
IPR009917 | SRA1/Sec31 | Domain | |
IPR036322 | WD40-repeat-containing domain superfamily | Homologous Superfamily | |
IPR001680 | WD40 repeat | Repeat | |
IPR024298 | Ancestral coatomer element 1, Sec16/Sec31 | Domain | |
IPR015943 | WD40/YVTN repeat-like-containing domain superfamily | Homologous Superfamily | |
IPR015943 | WD40/YVTN repeat-like-containing domain superfamily | Homologous Superfamily | |
IPR036322 | WD40-repeat-containing domain superfamily | Homologous Superfamily | |
IPR037363 | Sec13/Seh1 family | Family | |
IPR001680 | WD40 repeat | Repeat | |
D [auth F] | IPR015943 | WD40/YVTN repeat-like-containing domain superfamily | Homologous Superfamily |
D [auth F] | IPR036322 | WD40-repeat-containing domain superfamily | Homologous Superfamily |
D [auth F] | IPR037363 | Sec13/Seh1 family | Family |
D [auth F] | IPR001680 | WD40 repeat | Repeat |