3ZV0
Structure of the SHQ1P-CBF5P complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | SHQ1 C-terminal domain-like | 8103589 | 3002783 | SCOP2B (2022-06-29) |
B | SCOP2 Family | SHQ1 C-terminal domain-like | 8046678 | 4005235 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | SHQ1 C-terminal domain-like | 8103589 | 3002783 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | SHQ1 | e3zv0A1 | A: alpha arrays | X: SHQ1 C-terminal domain-like | H: SHQ1 C-terminal domain (From Topology) | T: SHQ1 C-terminal domain | F: SHQ1 | ECOD (1.6) |
B | SHQ1 | e3zv0B1 | A: alpha arrays | X: SHQ1 C-terminal domain-like | H: SHQ1 C-terminal domain (From Topology) | T: SHQ1 C-terminal domain | F: SHQ1 | ECOD (1.6) |
C | PUA | e3zv0C1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: PUA domain | F: PUA | ECOD (1.6) |
D | PUA | e3zv0D1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: PUA domain | F: PUA | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C | 2.30.130.10 | Mainly Beta | Roll | Archaeosine Trna-guanine Transglycosylase | Chain: A, domain 4 | CATH (4.3.0) |
D | 2.30.130.10 | Mainly Beta | Roll | Archaeosine Trna-guanine Transglycosylase | Chain: A, domain 4 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF04925 | SHQ1 protein, Shq1 domain (SHQ1) | SHQ1 protein, Shq1 domain | This domain is found at the C-terminal end of Protein SHQ1 homolog from humans and similar eukaryotic proteins. SHQ1 is a factor required for the biogenesis and assembly of H/ACA small nucleolar ribonucleoparticle (snoRNP), which are essential for ri ... | Domain | |
PF08068 | DKCLD (NUC011) domain (DKCLD) | DKCLD (NUC011) domain | This is a TruB_N/PUA domain associated N-terminal domain of Dyskerin-like proteins [1]. | Domain | |
PF01472 | PUA domain (PUA) | PUA domain | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR007052 | CS domain | Domain | |
IPR007009 | Shq1, C-terminal domain | Domain | |
IPR048696 | SHQ1-like, CS domain | Domain | |
IPR008978 | HSP20-like chaperone | Homologous Superfamily | |
IPR039742 | Protein Shq1 | Family | |
IPR015947 | PUA-like superfamily | Homologous Superfamily | |
IPR020103 | Pseudouridine synthase, catalytic domain superfamily | Homologous Superfamily | |
IPR004521 | Uncharacterised domain CHP00451 | Domain | |
IPR002501 | Pseudouridine synthase II, N-terminal | Domain | |
IPR036974 | PUA domain superfamily | Homologous Superfamily | |
IPR004802 | tRNA pseudouridine synthase B family | Family | |
IPR032819 | tRNA pseudouridylate synthase B, C-terminal | Domain | |
IPR012960 | Dyskerin-like | Domain | |
IPR002478 | PUA domain | Domain |