3WVF

Crystal structure of YidC from Escherichia coli

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Galactose mutarotase-like	8101839	3000035	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	YidC transmembrane domain-like	8101838	3002720	SCOP2B (2022-06-29)
B	SCOP2 Family	YidC transmembrane domain-like	8049833	4006662	SCOP2 (2022-06-29)
B	SCOP2 Family	YidC periplasmic domain-like	8050685	4007001	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	YidC transmembrane domain-like	8101838	3002720	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Galactose mutarotase-like	8101839	3000035	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF14849	e3wvfA1	A: beta sandwiches	X: Glycosyl hydrolase domain-like	H: supersandwich (From Topology)	T: supersandwich	F: PF14849	ECOD (1.6)
A	PF02096	e3wvfA2	A: alpha bundles	X: Membrane protein insertase YidC-related (From Homology)	H: Membrane protein insertase YidC-related	T: Membrane protein insertase YidC	F: PF02096	ECOD (1.6)
B	PF14849	e3wvfB2	A: beta sandwiches	X: Glycosyl hydrolase domain-like	H: supersandwich (From Topology)	T: supersandwich	F: PF14849	ECOD (1.6)
B	PF02096	e3wvfB1	A: alpha bundles	X: Membrane protein insertase YidC-related (From Homology)	H: Membrane protein insertase YidC-related	T: Membrane protein insertase YidC	F: PF02096	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.70.98.90	Mainly Beta	Distorted Sandwich	Beta-galactosidase	Chain A, domain 5	CATH (4.3.0)
B	2.70.98.90	Mainly Beta	Distorted Sandwich	Beta-galactosidase	Chain A, domain 5	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF02096	60Kd inner membrane protein (60KD_IMP)	60Kd inner membrane protein	-	Family
A, B	PF14849	YidC periplasmic domain (YidC_periplas)	YidC periplasmic domain	This is the periplasmic domain of YidC, a bacterial membrane protein which is required for the insertion and assembly of inner membrane proteins [1,2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Membrane protein insertase YidC	protein carrier chaperone membrane insertase activity molecular carrier activity	membrane organization protein localization cellular localization establishment of protein localization establishment of protein localization to membrane localization within membrane protein localization to membrane establishment of localization cellular component organization localization cellular macromolecule localization macromolecule localization cellular process cellular component organization or biogenesis membrane organization protein localization cellular localization establishment of protein localization establishment of protein localization to membrane localization within membrane protein localization to membrane establishment of localization cellular component organization localization cellular macromolecule localization macromolecule localization cellular process cellular component organization or biogenesis protein insertion into membrane nitrogen compound transport transport organic substance transport protein transport	cell periphery plasma membrane membrane cellular anatomical entity

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR047196	Membrane insertase YidC/ALB, C-terminal	Domain
A, B	IPR019998	Membrane insertase YidC	Family
A, B	IPR001708	Membrane insertase YidC/ALB3/OXA1/COX18	Family
A, B	IPR038221	YidC, periplasmic domain superfamily	Homologous Superfamily
A, B	IPR028053	Membrane insertase YidC, N-terminal	Domain
A, B	IPR028055	Membrane insertase YidC/Oxa/ALB, C-terminal	Domain

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A, B	MemProtMD	Annotated as membrane protein by MemProtMD

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.