3UPL

Crystal structure of the Brucella abortus enzyme catalyzing the first committed step of the methylerythritol 4-phosphate pathway.


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ASAFe3uplA3 A: beta barrelsX: beta-clipH: SET domain-like (From Topology)T: SET domain-likeF: SAFECOD (1.6)
ACOG4091e3uplA2 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: COG4091ECOD (1.6)
ANAD_binding_3e3uplA1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: NAD_binding_3ECOD (1.6)
BSAFe3uplB1 A: beta barrelsX: beta-clipH: SET domain-like (From Topology)T: SET domain-likeF: SAFECOD (1.6)
BCOG4091e3uplB2 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: COG4091ECOD (1.6)
BNAD_binding_3e3uplB3 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: NAD_binding_3ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF21135Oxidoreductase DRL, catalytic domain (DRL_cat)Oxidoreductase DRL, catalytic domainThis domain is found in DRL from Brucella abortus (Swiss:Q2YIM3) and other bacterial putative oxidoreductases and homoserine dehydrogenases. DRL is involved in isoprenoid biosynthesis. This protein is organised into three structural domains: N-termin ...This domain is found in DRL from Brucella abortus (Swiss:Q2YIM3) and other bacterial putative oxidoreductases and homoserine dehydrogenases. DRL is involved in isoprenoid biosynthesis. This protein is organised into three structural domains: N-terminal, central, (catalytic, this entry), and C-terminal. The catalytic domain shows an alpha/beta fold with a central four-stranded mixed beta-sheet. The active site lid is formed by a protusion made of two antiparallel helices connected by a short loop [1-2].
Domain
A, B
PF03447Homoserine dehydrogenase, NAD binding domain (NAD_binding_3)Homoserine dehydrogenase, NAD binding domainThis domain adopts a Rossmann NAD binding fold. The C-terminal domain of homoserine dehydrogenase contributes a single helix to this structural domain, which is not included in the Pfam model.Domain