3U3G
Structure of LC11-RNase H1 Isolated from Compost by Metagenomic Approach: Insight into the Structural Bases for Unusual Enzymatic Properties of Sto-RNase H1
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth D] | d3u3gd_ | Alpha and beta proteins (a/b) | Ribonuclease H-like motif | Ribonuclease H-like | automated matches | automated matches | (uncultured organism ) [TaxId: 155900 ], | SCOPe (2.08) |
B | d3u3gb_ | Alpha and beta proteins (a/b) | Ribonuclease H-like motif | Ribonuclease H-like | automated matches | automated matches | (uncultured organism ) [TaxId: 155900 ], | SCOPe (2.08) |
C | d3u3gc_ | Alpha and beta proteins (a/b) | Ribonuclease H-like motif | Ribonuclease H-like | automated matches | automated matches | (uncultured organism ) [TaxId: 155900 ], | SCOPe (2.08) |
D [auth A] | d3u3ga_ | Alpha and beta proteins (a/b) | Ribonuclease H-like motif | Ribonuclease H-like | automated matches | automated matches | (uncultured organism ) [TaxId: 155900 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth D] | SCOP2B Superfamily | Ribonuclease H-like | 8091469 | 3000143 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Ribonuclease H-like | 8091469 | 3000143 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Ribonuclease H-like | 8091469 | 3000143 | SCOP2B (2022-06-29) |
D [auth A] | SCOP2 Family | Ribonuclease H-like | 8048765 | 4000541 | SCOP2 (2022-06-29) |
D [auth A] | SCOP2 Superfamily | Ribonuclease H-like | 8091469 | 3000143 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth D] | RNase_H | e3u3gD1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: RNase_H | ECOD (1.6) |
B | RNase_H | e3u3gB1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: RNase_H | ECOD (1.6) |
C | RNase_H | e3u3gC1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: RNase_H | ECOD (1.6) |
D [auth A] | RNase_H | e3u3gA1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: RNase_H | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth D] | 3.30.420.10 | Alpha Beta | 2-Layer Sandwich | Nucleotidyltransferase | domain 5 | CATH (4.3.0) |
B | 3.30.420.10 | Alpha Beta | 2-Layer Sandwich | Nucleotidyltransferase | domain 5 | CATH (4.3.0) |
C | 3.30.420.10 | Alpha Beta | 2-Layer Sandwich | Nucleotidyltransferase | domain 5 | CATH (4.3.0) |
D [auth A] | 3.30.420.10 | Alpha Beta | 2-Layer Sandwich | Nucleotidyltransferase | domain 5 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth D], B, C, D [auth A] | PF13456 | Reverse transcriptase-like (RVT_3) | Reverse transcriptase-like | This domain is found in plants and appears to be part of a retrotransposon. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth D], B, C, D [auth A] | IPR036397 | Ribonuclease H superfamily | Homologous Superfamily |
A [auth D], B, C, D [auth A] | IPR002156 | Ribonuclease H domain | Domain |
A [auth D], B, C, D [auth A] | IPR012337 | Ribonuclease H-like superfamily | Homologous Superfamily |