3TS0
Mouse Lin28A in complex with let-7f-1 microRNA pre-element
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | CSD | e3ts0A5 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: CSD | ECOD (1.6) |
A | zf-CCHC | e3ts0A4 | A: few secondary structure elements | X: CCHC-type 1 zinc finger | H: CCHC-type 1 zinc finger (From Topology) | T: CCHC-type 1 zinc finger | F: zf-CCHC | ECOD (1.6) |
A | zf-CCHC_2_like_1 | e3ts0A3 | A: few secondary structure elements | X: CCHC-type 1 zinc finger | H: CCHC-type 1 zinc finger (From Topology) | T: CCHC-type 1 zinc finger | F: zf-CCHC_2_like_1 | ECOD (1.6) |
B | CSD | e3ts0B5 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: CSD | ECOD (1.6) |
B | zf-CCHC | e3ts0B4 | A: few secondary structure elements | X: CCHC-type 1 zinc finger | H: CCHC-type 1 zinc finger (From Topology) | T: CCHC-type 1 zinc finger | F: zf-CCHC | ECOD (1.6) |
B | zf-CCHC_2_like_1 | e3ts0B3 | A: few secondary structure elements | X: CCHC-type 1 zinc finger | H: CCHC-type 1 zinc finger (From Topology) | T: CCHC-type 1 zinc finger | F: zf-CCHC_2_like_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.40.50.140 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | Nucleic acid-binding proteins | CATH (4.3.0) |
A | 4.10.60.10 | Few Secondary Structures | Irregular | HIV-1 Nucleocapsid Protein | Zinc finger, CCHC-type | CATH (4.3.0) |
B | 2.40.50.140 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | Nucleic acid-binding proteins | CATH (4.3.0) |
B | 4.10.60.10 | Few Secondary Structures | Irregular | HIV-1 Nucleocapsid Protein | Zinc finger, CCHC-type | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF21890 | Lin-28A-like, second zinc knuckle (Lin-28A-like_zf-CCHC_2) | Lin-28A-like, second zinc knuckle | This domain is found at the C-terminal end of human Protein lin-28 homolog A (Lin-28A), an RNA-binding protein that inhibits processing of pre-let-7 miRNAs and regulates translation of mRNAs that control developmental timing, pluripotency and metabol ... | Domain | |
PF00098 | Zinc knuckle (zf-CCHC) | Zinc knuckle | The zinc knuckle is a zinc binding motif composed of the the following CX2CX4HX4C where X can be any amino acid. The motifs are mostly from retroviral gag proteins (nucleocapsid). Prototype structure is from HIV. Also contains members involved in eu ... | Domain | |
PF00313 | 'Cold-shock' DNA-binding domain (CSD) | 'Cold-shock' DNA-binding domain | - | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR051373 | Lin-28 homolog RNA-binding protein | Family | |
IPR001878 | Zinc finger, CCHC-type | Domain | |
IPR002059 | Cold-shock protein Csp, DNA-binding | Domain | |
IPR011129 | Cold-shock domain | Domain | |
IPR036875 | Zinc finger, CCHC-type superfamily | Homologous Superfamily | |
IPR012340 | Nucleic acid-binding, OB-fold | Homologous Superfamily |