3SIU
Structure of a hPrp31-15.5K-U4atac 5' stem loop complex, monomeric form
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
D | SCOP2B Superfamily | L30e-like | 8043738 | 3001739 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | L30e-like | 8043738 | 3001739 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Nop domain | 8033305 | 3001551 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Nop domain | 8033305 | 3001551 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
D | Ribosomal_L7Ae_1 | e3siuD1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: Ribosomal_L7Ae_1 | ECOD (1.6) |
A | Ribosomal_L7Ae_1 | e3siuA1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: Ribosomal_L7Ae_1 | ECOD (1.6) |
B | Nop_C | e3siuB2 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: Nop C-terminal domain | F: Nop_C | ECOD (1.6) |
B | Nop_N | e3siuB1 | A: alpha complex topology | X: Nop N-terminal domain (From Topology) | H: Nop N-terminal domain (From Topology) | T: Nop N-terminal domain | F: Nop_N | ECOD (1.6) |
E | Nop_C | e3siuE1 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: Nop C-terminal domain | F: Nop_C | ECOD (1.6) |
E | Nop_N | e3siuE2 | A: alpha complex topology | X: Nop N-terminal domain (From Topology) | H: Nop N-terminal domain (From Topology) | T: Nop N-terminal domain | F: Nop_N | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
D | 3.30.1330.30 | Alpha Beta | 2-Layer Sandwich | 60s Ribosomal Protein L30 | Chain: A | CATH (4.3.0) |
A | 3.30.1330.30 | Alpha Beta | 2-Layer Sandwich | 60s Ribosomal Protein L30 | Chain: A | CATH (4.3.0) |
B | 1.10.287.4070 | Mainly Alpha | Orthogonal Bundle | Helix Hairpins | CATH (4.3.0) | |
B | 1.10.246.90 | Mainly Alpha | Orthogonal Bundle | Serum Albumin | Chain A, Domain 1 | CATH (4.3.0) |
E | 1.10.287.4070 | Mainly Alpha | Orthogonal Bundle | Helix Hairpins | CATH (4.3.0) | |
E | 1.10.246.90 | Mainly Alpha | Orthogonal Bundle | Serum Albumin | Chain A, Domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain | |
PF01798 | snoRNA binding domain, fibrillarin (Nop) | snoRNA binding domain, fibrillarin | - | Family | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR050257 | Eukaryotic ribosomal RNA-processing and assembly protein | Family | |
IPR002415 | H/ACA ribonucleoprotein complex, subunit Nhp2-like | Family | |
IPR029064 | Ribosomal protein eL30-like superfamily | Homologous Superfamily | |
IPR018492 | Ribosomal protein eL8/Nhp2 family | Family | |
IPR004038 | Ribosomal protein eL8/eL30/eS12/Gadd45 | Domain | |
IPR004037 | Large ribosomal subunit protein eL8-like, conserved site | Conserved Site | |
IPR042239 | Nop, C-terminal domain | Homologous Superfamily | |
IPR019175 | Prp31 C-terminal | Domain | |
IPR002687 | Nop domain | Domain | |
IPR012976 | NOSIC | Domain | |
IPR027105 | U4/U6 small nuclear ribonucleoprotein Prp31 | Family | |
IPR036070 | Nop domain superfamily | Homologous Superfamily |