3RF1
The crystal structure of glycyl-tRNA synthetase subunit alpha from Campylobacter jejuni subsp. jejuni NCTC 11168
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d3rf1a1 | Alpha and beta proteins (a+b) | Class II aaRS and biotin synthetases | Class II aaRS and biotin synthetases | Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain | automated matches | (Campylobacter jejuni subsp. jejuni 81-176 ) [TaxId: 354242 ], | SCOPe (2.08) |
A | d3rf1a2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Campylobacter jejuni subsp. jejuni 81-176 ) [TaxId: 354242 ], | SCOPe (2.08) |
B | d3rf1b1 | Alpha and beta proteins (a+b) | Class II aaRS and biotin synthetases | Class II aaRS and biotin synthetases | Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain | automated matches | (Campylobacter jejuni subsp. jejuni 81-176 ) [TaxId: 354242 ], | SCOPe (2.08) |
B | d3rf1b2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Campylobacter jejuni subsp. jejuni 81-176 ) [TaxId: 354242 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Class II aminoacyl-tRNA synthetase (aaRS)-like catalytic domain | 8089393 | 4001782 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Class II aaRS and biotin synthetases | 8089394 | 3000058 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | Class II aaRS and biotin synthetases | 8089394 | 3000058 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF02091 | e3rf1A1 | A: a+b three layers | X: Class II aaRS and biotin synthetases (From Topology) | H: Class II aaRS and biotin synthetases (From Topology) | T: Class II aaRS and biotin synthetases | F: PF02091 | ECOD (1.6) |
B | PF02091 | e3rf1B1 | A: a+b three layers | X: Class II aaRS and biotin synthetases (From Topology) | H: Class II aaRS and biotin synthetases (From Topology) | T: Class II aaRS and biotin synthetases | F: PF02091 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.930.10 | Alpha Beta | 2-Layer Sandwich | BirA Bifunctional Protein | domain 2 | CATH (4.3.0) |
A | 1.20.58.180 | Mainly Alpha | Up-down Bundle | Methane Monooxygenase Hydroxylase | Chain G, domain 1 | CATH (4.3.0) |
B | 3.30.930.10 | Alpha Beta | 2-Layer Sandwich | BirA Bifunctional Protein | domain 2 | CATH (4.3.0) |
B | 1.20.58.180 | Mainly Alpha | Up-down Bundle | Methane Monooxygenase Hydroxylase | Chain G, domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02091 | Glycyl-tRNA synthetase alpha subunit (tRNA-synt_2e) | Glycyl-tRNA synthetase alpha subunit | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR002310 | Glycine-tRNA ligase, alpha subunit | Family | |
IPR045864 | Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL) | Homologous Superfamily | |
IPR006194 | Glycine-tRNA synthetase, heterodimeric | Family |