3QYF
Crystal structure of the CRISPR-associated protein SSO1393 from Sulfolobus solfataricus
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Cas_APE2256-like | 8045334 | 4004418 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Winged helix DNA-binding domain | 8090253 | 3000034 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | PIN domain-like | 8090252 | 3001041 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | PIN domain-like | 8090252 | 3001041 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Winged helix DNA-binding domain | 8090253 | 3000034 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF22165 | e3qyfA2 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF22165 | ECOD (1.6) |
A | PF09651 | e3qyfA1 | A: a/b three-layered sandwiches | X: CARF (CRISPR-associated Rossmann fold) domains (From Topology) | H: CARF (CRISPR-associated Rossmann fold) domains (From Topology) | T: CARF (CRISPR-associated Rossmann fold) domains | F: PF09651 | ECOD (1.6) |
B | PF22165 | e3qyfB1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF22165 | ECOD (1.6) |
B | PF09651 | e3qyfB2 | A: a/b three-layered sandwiches | X: CARF (CRISPR-associated Rossmann fold) domains (From Topology) | H: CARF (CRISPR-associated Rossmann fold) domains (From Topology) | T: CARF (CRISPR-associated Rossmann fold) domains | F: PF09651 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.10770 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Hypothetical protein VC1899 like domain (Restriction endonuclease-like) | CATH (4.3.0) |
A | 1.10.196.30 | Mainly Alpha | Orthogonal Bundle | Regulator of G-protein Signalling 4 | domain 1 | CATH (4.3.0) |
A | 1.10.10.1690 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Uncharacterised CRISPR-associated protein family, UPF0236 | CATH (4.3.0) |
B | 3.40.50.10770 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Hypothetical protein VC1899 like domain (Restriction endonuclease-like) | CATH (4.3.0) |
B | 1.10.196.30 | Mainly Alpha | Orthogonal Bundle | Regulator of G-protein Signalling 4 | domain 1 | CATH (4.3.0) |
B | 1.10.10.1690 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Uncharacterised CRISPR-associated protein family, UPF0236 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF09651 | CRISPR-associated protein (Cas_APE2256) (Cas_APE2256) | CRISPR-associated protein (Cas_APE2256) | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
CRISPR-ASSOCIATED PROTEIN |
|
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR016620 | CRISPR system ring nuclease SSO1393 | Family | |
IPR013442 | CRISPR system ring nuclease SSO1393-like | Domain |